Hb_114917_010

Information

Type -
Description -
Location Contig114917: 2843-3436
Sequence    

Annotation

kegg
ID rcu:RCOM_1293230
description Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative
nr
ID XP_012065545.1
description PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
swissprot
ID P82658
description Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2
trembl
ID A0A067L4V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16749 PE=4 SV=1
Gene Ontology
ID GO:0009654
description thylakoid lumenal 19 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114917_010 0.0 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
2 Hb_002613_040 0.0890293457 - - phosphate translocator-related family protein [Populus trichocarpa]
3 Hb_003097_220 0.1116141071 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
4 Hb_003058_170 0.1126877054 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
5 Hb_020378_020 0.1147366927 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_028396_020 0.1200151945 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
7 Hb_001916_150 0.1215146271 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
8 Hb_000103_130 0.1242225177 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
9 Hb_006750_010 0.1265993541 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
10 Hb_011242_010 0.1314914553 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
11 Hb_164945_020 0.1325845633 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
12 Hb_006355_060 0.1334361254 - - PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
13 Hb_020141_030 0.1358262591 - - solanesyl diphosphate synthase, putative [Ricinus communis]
14 Hb_001369_390 0.1368177595 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
15 Hb_003018_150 0.1409510532 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
16 Hb_163950_050 0.1438961952 - - protein binding protein, putative [Ricinus communis]
17 Hb_001008_080 0.1441328286 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
18 Hb_001538_080 0.1454019772 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
19 Hb_005183_040 0.1476102261 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
20 Hb_002119_110 0.148870084 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]

Gene co-expression network

sample Hb_114917_010 Hb_114917_010 Hb_002613_040 Hb_002613_040 Hb_114917_010--Hb_002613_040 Hb_003097_220 Hb_003097_220 Hb_114917_010--Hb_003097_220 Hb_003058_170 Hb_003058_170 Hb_114917_010--Hb_003058_170 Hb_020378_020 Hb_020378_020 Hb_114917_010--Hb_020378_020 Hb_028396_020 Hb_028396_020 Hb_114917_010--Hb_028396_020 Hb_001916_150 Hb_001916_150 Hb_114917_010--Hb_001916_150 Hb_000103_130 Hb_000103_130 Hb_002613_040--Hb_000103_130 Hb_163950_050 Hb_163950_050 Hb_002613_040--Hb_163950_050 Hb_006355_060 Hb_006355_060 Hb_002613_040--Hb_006355_060 Hb_002613_040--Hb_003097_220 Hb_006750_010 Hb_006750_010 Hb_002613_040--Hb_006750_010 Hb_003097_220--Hb_006355_060 Hb_012239_060 Hb_012239_060 Hb_003097_220--Hb_012239_060 Hb_005057_030 Hb_005057_030 Hb_003097_220--Hb_005057_030 Hb_005725_160 Hb_005725_160 Hb_003097_220--Hb_005725_160 Hb_000076_060 Hb_000076_060 Hb_003058_170--Hb_000076_060 Hb_003018_150 Hb_003018_150 Hb_003058_170--Hb_003018_150 Hb_002713_060 Hb_002713_060 Hb_003058_170--Hb_002713_060 Hb_001210_060 Hb_001210_060 Hb_003058_170--Hb_001210_060 Hb_000847_030 Hb_000847_030 Hb_003058_170--Hb_000847_030 Hb_029223_010 Hb_029223_010 Hb_003058_170--Hb_029223_010 Hb_003006_090 Hb_003006_090 Hb_020378_020--Hb_003006_090 Hb_020378_020--Hb_028396_020 Hb_020378_020--Hb_006750_010 Hb_004241_110 Hb_004241_110 Hb_020378_020--Hb_004241_110 Hb_001008_080 Hb_001008_080 Hb_020378_020--Hb_001008_080 Hb_028396_020--Hb_006750_010 Hb_034168_050 Hb_034168_050 Hb_028396_020--Hb_034168_050 Hb_010222_040 Hb_010222_040 Hb_028396_020--Hb_010222_040 Hb_001677_040 Hb_001677_040 Hb_028396_020--Hb_001677_040 Hb_003783_050 Hb_003783_050 Hb_001916_150--Hb_003783_050 Hb_003778_020 Hb_003778_020 Hb_001916_150--Hb_003778_020 Hb_000300_680 Hb_000300_680 Hb_001916_150--Hb_000300_680 Hb_003226_250 Hb_003226_250 Hb_001916_150--Hb_003226_250 Hb_030312_030 Hb_030312_030 Hb_001916_150--Hb_030312_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.353037 10.1597 13.7001 35.5884 0.248735 0.488734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23001 2.4972 1.8288 5.983 46.2248

CAGE analysis