Hb_003006_090

Information

Type -
Description -
Location Contig3006: 169203-178963
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07120g
description POPTRDRAFT_819877A, POPTRDRAFT_819877B; cellulose synthase family protein
nr
ID XP_012075293.1
description PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
swissprot
ID Q94JQ6
description Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2
trembl
ID A0A067KGS5
description Cellulose synthase OS=Jatropha curcas GN=JCGZ_09461 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase a catalytic subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31697: 169303-178946
cDNA
(Sanger)
(ID:Location)		 010_G12.ab1: 177992-178305

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003006_090 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
2 Hb_000271_220 0.1084620029 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
3 Hb_002542_060 0.1122415553 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
4 Hb_003462_040 0.1141164927 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_001195_660 0.1183702931 - - metalloendopeptidase, putative [Ricinus communis]
6 Hb_001677_040 0.118818321 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
7 Hb_000603_020 0.1193779228 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
8 Hb_020378_020 0.1205594077 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_000347_190 0.1233106865 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
10 Hb_006750_010 0.1241681274 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
11 Hb_000349_200 0.1256375501 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
12 Hb_000283_140 0.1261039093 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
13 Hb_000056_110 0.1264619685 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
14 Hb_012807_150 0.1274020133 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
15 Hb_003226_250 0.1279287291 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
16 Hb_003582_090 0.1291990608 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
17 Hb_002559_030 0.1313667652 - - oxidoreductase, putative [Ricinus communis]
18 Hb_116702_010 0.1349524273 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
19 Hb_000227_280 0.1375317097 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
20 Hb_003783_050 0.1389312491 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003006_090 Hb_003006_090 Hb_000271_220 Hb_000271_220 Hb_003006_090--Hb_000271_220 Hb_002542_060 Hb_002542_060 Hb_003006_090--Hb_002542_060 Hb_003462_040 Hb_003462_040 Hb_003006_090--Hb_003462_040 Hb_001195_660 Hb_001195_660 Hb_003006_090--Hb_001195_660 Hb_001677_040 Hb_001677_040 Hb_003006_090--Hb_001677_040 Hb_000603_020 Hb_000603_020 Hb_003006_090--Hb_000603_020 Hb_000271_220--Hb_000603_020 Hb_012807_150 Hb_012807_150 Hb_000271_220--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000271_220--Hb_000283_140 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003001_130 Hb_003001_130 Hb_000271_220--Hb_003001_130 Hb_000099_170 Hb_000099_170 Hb_002542_060--Hb_000099_170 Hb_000357_070 Hb_000357_070 Hb_002542_060--Hb_000357_070 Hb_001017_130 Hb_001017_130 Hb_002542_060--Hb_001017_130 Hb_000805_010 Hb_000805_010 Hb_002542_060--Hb_000805_010 Hb_001153_100 Hb_001153_100 Hb_002542_060--Hb_001153_100 Hb_001369_010 Hb_001369_010 Hb_003462_040--Hb_001369_010 Hb_006750_010 Hb_006750_010 Hb_003462_040--Hb_006750_010 Hb_019516_060 Hb_019516_060 Hb_003462_040--Hb_019516_060 Hb_003226_250 Hb_003226_250 Hb_003462_040--Hb_003226_250 Hb_003462_040--Hb_001195_660 Hb_003847_040 Hb_003847_040 Hb_001195_660--Hb_003847_040 Hb_026549_070 Hb_026549_070 Hb_001195_660--Hb_026549_070 Hb_001195_660--Hb_000283_140 Hb_009079_050 Hb_009079_050 Hb_001195_660--Hb_009079_050 Hb_003582_090 Hb_003582_090 Hb_001195_660--Hb_003582_090 Hb_000139_300 Hb_000139_300 Hb_001195_660--Hb_000139_300 Hb_001677_040--Hb_001195_660 Hb_000417_050 Hb_000417_050 Hb_001677_040--Hb_000417_050 Hb_000333_030 Hb_000333_030 Hb_001677_040--Hb_000333_030 Hb_002662_110 Hb_002662_110 Hb_001677_040--Hb_002662_110 Hb_002675_080 Hb_002675_080 Hb_001677_040--Hb_002675_080 Hb_001053_020 Hb_001053_020 Hb_001677_040--Hb_001053_020 Hb_000603_020--Hb_003001_130 Hb_000603_020--Hb_012807_150 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1032 46.4088 57.0717 142.149 7.91299 12.7652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.988 5.75782 12.1631 22.5324 134.894

CAGE analysis