Hb_001153_100

Information

Type transcription factor
Description TF Family: HB
Location Contig1153: 57277-62043
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08550g
description POPTRDRAFT_845868; homeodomain transcription factor family protein
nr
ID XP_012087042.1
description PREDICTED: homeobox protein HD1 [Jatropha curcas]
swissprot
ID Q9FPQ8
description Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1
trembl
ID A0A067JRS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20699 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04606: 57494-61943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_100 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
2 Hb_005731_100 0.0975298745 - - monovalent cation:proton antiporter, putative [Ricinus communis]
3 Hb_000357_070 0.1114021024 - - -
4 Hb_001433_150 0.1155774473 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002835_280 0.1171383024 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
6 Hb_022425_050 0.1200664725 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
7 Hb_034579_020 0.1208925862 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002374_450 0.1253101101 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
9 Hb_000115_360 0.1255529754 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
10 Hb_000181_330 0.1266102138 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
11 Hb_002026_030 0.1278317546 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
12 Hb_005276_070 0.1282417874 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
13 Hb_000635_050 0.1289955221 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
14 Hb_001124_140 0.1300907928 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
15 Hb_000099_170 0.1303186945 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
16 Hb_033152_110 0.1306629435 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
17 Hb_000140_060 0.132193618 - - 50S ribosomal protein L5, putative [Ricinus communis]
18 Hb_005488_130 0.1332504331 - - transporter, putative [Ricinus communis]
19 Hb_002662_110 0.1343849643 - - Kinesin heavy chain, putative [Ricinus communis]
20 Hb_002542_060 0.1364038114 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_001153_100 Hb_001153_100 Hb_005731_100 Hb_005731_100 Hb_001153_100--Hb_005731_100 Hb_000357_070 Hb_000357_070 Hb_001153_100--Hb_000357_070 Hb_001433_150 Hb_001433_150 Hb_001153_100--Hb_001433_150 Hb_002835_280 Hb_002835_280 Hb_001153_100--Hb_002835_280 Hb_022425_050 Hb_022425_050 Hb_001153_100--Hb_022425_050 Hb_034579_020 Hb_034579_020 Hb_001153_100--Hb_034579_020 Hb_001124_140 Hb_001124_140 Hb_005731_100--Hb_001124_140 Hb_005731_100--Hb_022425_050 Hb_000046_480 Hb_000046_480 Hb_005731_100--Hb_000046_480 Hb_000334_050 Hb_000334_050 Hb_005731_100--Hb_000334_050 Hb_001754_120 Hb_001754_120 Hb_005731_100--Hb_001754_120 Hb_000357_070--Hb_034579_020 Hb_000388_080 Hb_000388_080 Hb_000357_070--Hb_000388_080 Hb_002028_110 Hb_002028_110 Hb_000357_070--Hb_002028_110 Hb_000635_050 Hb_000635_050 Hb_000357_070--Hb_000635_050 Hb_002675_080 Hb_002675_080 Hb_000357_070--Hb_002675_080 Hb_000283_140 Hb_000283_140 Hb_000357_070--Hb_000283_140 Hb_001180_010 Hb_001180_010 Hb_001433_150--Hb_001180_010 Hb_001433_150--Hb_002028_110 Hb_002641_120 Hb_002641_120 Hb_001433_150--Hb_002641_120 Hb_001544_050 Hb_001544_050 Hb_001433_150--Hb_001544_050 Hb_002759_220 Hb_002759_220 Hb_001433_150--Hb_002759_220 Hb_005305_120 Hb_005305_120 Hb_002835_280--Hb_005305_120 Hb_001969_130 Hb_001969_130 Hb_002835_280--Hb_001969_130 Hb_000032_510 Hb_000032_510 Hb_002835_280--Hb_000032_510 Hb_000923_100 Hb_000923_100 Hb_002835_280--Hb_000923_100 Hb_002835_280--Hb_001124_140 Hb_001865_010 Hb_001865_010 Hb_022425_050--Hb_001865_010 Hb_004223_270 Hb_004223_270 Hb_022425_050--Hb_004223_270 Hb_022425_050--Hb_000334_050 Hb_022425_050--Hb_001124_140 Hb_022425_050--Hb_001969_130 Hb_012180_060 Hb_012180_060 Hb_034579_020--Hb_012180_060 Hb_003050_360 Hb_003050_360 Hb_034579_020--Hb_003050_360 Hb_004545_080 Hb_004545_080 Hb_034579_020--Hb_004545_080 Hb_002374_450 Hb_002374_450 Hb_034579_020--Hb_002374_450 Hb_003020_250 Hb_003020_250 Hb_034579_020--Hb_003020_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.16018 18.6493 38.4103 35.5484 0.991302 1.17077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28195 4.03118 3.72113 11.3676 51.5599

CAGE analysis