Hb_003050_360

Information

Type -
Description -
Location Contig3050: 326013-334760
Sequence    

Annotation

kegg
ID vvi:100250429
description tobamovirus multiplication protein 1
nr
ID XP_012072060.1
description PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9FEG2
description Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana GN=TOM1 PE=1 SV=1
trembl
ID A0A067KP73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04580 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tobamovirus multiplication protein 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32165: 327649-328898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_360 0.0 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
2 Hb_000689_050 0.0825734781 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007101_260 0.0890158258 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
4 Hb_112064_010 0.0893008488 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
5 Hb_004545_080 0.0992813829 - - protein with unknown function [Ricinus communis]
6 Hb_011174_040 0.1027889196 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001377_530 0.1036154082 - - NC domain-containing family protein [Populus trichocarpa]
8 Hb_002942_140 0.1070796276 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
9 Hb_034579_020 0.1081239235 - - conserved hypothetical protein [Ricinus communis]
10 Hb_013405_070 0.119396283 - - ferric-chelate reductase, putative [Ricinus communis]
11 Hb_000996_080 0.1196353003 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
12 Hb_000357_070 0.1196907627 - - -
13 Hb_000327_200 0.1204453545 - - glutathione-s-transferase omega, putative [Ricinus communis]
14 Hb_014497_010 0.1206825477 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
15 Hb_012180_060 0.1207160055 - - peptidase, putative [Ricinus communis]
16 Hb_000310_060 0.1209609366 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
17 Hb_004855_020 0.1235591826 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
18 Hb_000753_110 0.1237415479 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
19 Hb_001587_040 0.1239711832 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
20 Hb_000032_410 0.1239976928 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]

Gene co-expression network

sample Hb_003050_360 Hb_003050_360 Hb_000689_050 Hb_000689_050 Hb_003050_360--Hb_000689_050 Hb_007101_260 Hb_007101_260 Hb_003050_360--Hb_007101_260 Hb_112064_010 Hb_112064_010 Hb_003050_360--Hb_112064_010 Hb_004545_080 Hb_004545_080 Hb_003050_360--Hb_004545_080 Hb_011174_040 Hb_011174_040 Hb_003050_360--Hb_011174_040 Hb_001377_530 Hb_001377_530 Hb_003050_360--Hb_001377_530 Hb_005074_040 Hb_005074_040 Hb_000689_050--Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_000689_050--Hb_014497_010 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_000689_050--Hb_004545_080 Hb_000327_360 Hb_000327_360 Hb_007101_260--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_007101_260--Hb_161396_010 Hb_000193_340 Hb_000193_340 Hb_007101_260--Hb_000193_340 Hb_000283_140 Hb_000283_140 Hb_007101_260--Hb_000283_140 Hb_007101_260--Hb_006120_060 Hb_001360_030 Hb_001360_030 Hb_112064_010--Hb_001360_030 Hb_000635_050 Hb_000635_050 Hb_112064_010--Hb_000635_050 Hb_002942_140 Hb_002942_140 Hb_112064_010--Hb_002942_140 Hb_034579_020 Hb_034579_020 Hb_112064_010--Hb_034579_020 Hb_000115_360 Hb_000115_360 Hb_112064_010--Hb_000115_360 Hb_000032_410 Hb_000032_410 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_004545_080--Hb_002942_140 Hb_003175_070 Hb_003175_070 Hb_004545_080--Hb_003175_070 Hb_000076_030 Hb_000076_030 Hb_011174_040--Hb_000076_030 Hb_011174_040--Hb_007101_260 Hb_048476_140 Hb_048476_140 Hb_011174_040--Hb_048476_140 Hb_010672_050 Hb_010672_050 Hb_011174_040--Hb_010672_050 Hb_010381_040 Hb_010381_040 Hb_011174_040--Hb_010381_040 Hb_002641_120 Hb_002641_120 Hb_001377_530--Hb_002641_120 Hb_003398_040 Hb_003398_040 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310 Hb_003299_020 Hb_003299_020 Hb_001377_530--Hb_003299_020 Hb_001408_170 Hb_001408_170 Hb_001377_530--Hb_001408_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.288258 1.06593 4.23066 3.37011 0.211934 0.290795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.299692 0.471537 0.687534 1.53834 2.84299

CAGE analysis