Hb_000115_360

Information

Type -
Description -
Location Contig115: 396630-402446
Sequence    

Annotation

kegg
ID rcu:RCOM_1310290
description protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012082143.1
description PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
swissprot
ID Q9M9C6
description Probable protein phosphatase 2C 15 OS=Arabidopsis thaliana GN=At1g68410 PE=2 SV=1
trembl
ID A0A067JZP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18372 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04551: 396664-402401 , PASA_asmbl_04552: 401503-401658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_360 0.0 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
2 Hb_033152_110 0.0859902406 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
3 Hb_000622_060 0.0936318372 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
4 Hb_002391_320 0.1037618989 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
5 Hb_003226_200 0.1066349367 - - magnesium/proton exchanger, putative [Ricinus communis]
6 Hb_004129_010 0.1169688306 - - aspartate aminotransferase, putative [Ricinus communis]
7 Hb_112064_010 0.119836662 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
8 Hb_000130_200 0.1206358257 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
9 Hb_001153_100 0.1255529754 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
10 Hb_000941_120 0.1260684628 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
11 Hb_007101_260 0.1266656837 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
12 Hb_012851_020 0.1274681434 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000032_600 0.1275770319 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_001124_140 0.1276794597 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
15 Hb_002397_050 0.12778712 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
16 Hb_001250_080 0.1293089575 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
17 Hb_003783_050 0.1300164091 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001754_120 0.1304849507 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
19 Hb_000414_080 0.1317034198 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
20 Hb_033363_050 0.1324560501 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000115_360 Hb_000115_360 Hb_033152_110 Hb_033152_110 Hb_000115_360--Hb_033152_110 Hb_000622_060 Hb_000622_060 Hb_000115_360--Hb_000622_060 Hb_002391_320 Hb_002391_320 Hb_000115_360--Hb_002391_320 Hb_003226_200 Hb_003226_200 Hb_000115_360--Hb_003226_200 Hb_004129_010 Hb_004129_010 Hb_000115_360--Hb_004129_010 Hb_112064_010 Hb_112064_010 Hb_000115_360--Hb_112064_010 Hb_033152_110--Hb_003226_200 Hb_033152_110--Hb_000622_060 Hb_000130_200 Hb_000130_200 Hb_033152_110--Hb_000130_200 Hb_001754_120 Hb_001754_120 Hb_033152_110--Hb_001754_120 Hb_000046_480 Hb_000046_480 Hb_033152_110--Hb_000046_480 Hb_000622_060--Hb_000130_200 Hb_000622_060--Hb_003226_200 Hb_000032_600 Hb_000032_600 Hb_000622_060--Hb_000032_600 Hb_000622_060--Hb_004129_010 Hb_002016_140 Hb_002016_140 Hb_002391_320--Hb_002016_140 Hb_012762_040 Hb_012762_040 Hb_002391_320--Hb_012762_040 Hb_007101_260 Hb_007101_260 Hb_002391_320--Hb_007101_260 Hb_001250_080 Hb_001250_080 Hb_002391_320--Hb_001250_080 Hb_002391_320--Hb_004129_010 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_001754_050 Hb_001754_050 Hb_004129_010--Hb_001754_050 Hb_007229_050 Hb_007229_050 Hb_004129_010--Hb_007229_050 Hb_000256_160 Hb_000256_160 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010 Hb_003050_360 Hb_003050_360 Hb_112064_010--Hb_003050_360 Hb_001360_030 Hb_001360_030 Hb_112064_010--Hb_001360_030 Hb_000635_050 Hb_000635_050 Hb_112064_010--Hb_000635_050 Hb_002942_140 Hb_002942_140 Hb_112064_010--Hb_002942_140 Hb_034579_020 Hb_034579_020 Hb_112064_010--Hb_034579_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26621 7.38038 14.0156 15.3924 0.852925 0.74834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6135 4.27864 3.16692 8.6132 21.0133

CAGE analysis