Hb_001250_080

Information

Type -
Description -
Location Contig1250: 62478-63629
Sequence    

Annotation

kegg
ID rcu:RCOM_0529260
description hypothetical protein
nr
ID XP_012085433.1
description PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
swissprot
ID Q9LDE3
description F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana GN=At1g23390 PE=2 SV=1
trembl
ID A0A067K2Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17778 PE=4 SV=1
Gene Ontology
ID GO:0016020
description f-box kelch-repeat protein at1g23390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07640: 62447-63774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_080 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
2 Hb_000028_430 0.1124045008 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
3 Hb_004943_040 0.1134310947 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
4 Hb_002391_320 0.1140255868 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
5 Hb_000570_020 0.1188403291 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
6 Hb_000928_120 0.1219173409 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
7 Hb_000800_010 0.1249343854 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
8 Hb_000283_140 0.1262283961 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
9 Hb_000115_360 0.1293089575 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
10 Hb_012762_040 0.1303448848 - - big map kinase/bmk, putative [Ricinus communis]
11 Hb_000422_080 0.1323001983 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
12 Hb_000227_280 0.134311249 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
13 Hb_007101_260 0.1344113796 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
14 Hb_000622_330 0.1354670541 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
15 Hb_003001_130 0.1379997239 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004522_030 0.1399241843 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
17 Hb_001865_100 0.1407662076 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
18 Hb_002325_060 0.1411199008 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
19 Hb_003216_130 0.1417312041 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
20 Hb_000941_120 0.1443317876 - - hypothetical protein JCGZ_25565 [Jatropha curcas]

Gene co-expression network

sample Hb_001250_080 Hb_001250_080 Hb_000028_430 Hb_000028_430 Hb_001250_080--Hb_000028_430 Hb_004943_040 Hb_004943_040 Hb_001250_080--Hb_004943_040 Hb_002391_320 Hb_002391_320 Hb_001250_080--Hb_002391_320 Hb_000570_020 Hb_000570_020 Hb_001250_080--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_001250_080--Hb_000928_120 Hb_000800_010 Hb_000800_010 Hb_001250_080--Hb_000800_010 Hb_005054_020 Hb_005054_020 Hb_000028_430--Hb_005054_020 Hb_000227_280 Hb_000227_280 Hb_000028_430--Hb_000227_280 Hb_000028_430--Hb_000928_120 Hb_003001_130 Hb_003001_130 Hb_000028_430--Hb_003001_130 Hb_003849_190 Hb_003849_190 Hb_000028_430--Hb_003849_190 Hb_004943_040--Hb_000570_020 Hb_000283_140 Hb_000283_140 Hb_004943_040--Hb_000283_140 Hb_001865_100 Hb_001865_100 Hb_004943_040--Hb_001865_100 Hb_000422_080 Hb_000422_080 Hb_004943_040--Hb_000422_080 Hb_000157_140 Hb_000157_140 Hb_004943_040--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_004943_040--Hb_002805_090 Hb_000115_360 Hb_000115_360 Hb_002391_320--Hb_000115_360 Hb_002016_140 Hb_002016_140 Hb_002391_320--Hb_002016_140 Hb_012762_040 Hb_012762_040 Hb_002391_320--Hb_012762_040 Hb_007101_260 Hb_007101_260 Hb_002391_320--Hb_007101_260 Hb_004129_010 Hb_004129_010 Hb_002391_320--Hb_004129_010 Hb_116349_120 Hb_116349_120 Hb_000570_020--Hb_116349_120 Hb_007537_030 Hb_007537_030 Hb_000570_020--Hb_007537_030 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_000570_020--Hb_000283_140 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030 Hb_004522_030 Hb_004522_030 Hb_000928_120--Hb_004522_030 Hb_000928_120--Hb_000283_140 Hb_000928_120--Hb_003001_130 Hb_000622_330 Hb_000622_330 Hb_000928_120--Hb_000622_330 Hb_000928_120--Hb_000570_020 Hb_000928_120--Hb_007537_030 Hb_000416_060 Hb_000416_060 Hb_000800_010--Hb_000416_060 Hb_005588_120 Hb_005588_120 Hb_000800_010--Hb_005588_120 Hb_006414_010 Hb_006414_010 Hb_000800_010--Hb_006414_010 Hb_000800_010--Hb_004129_010 Hb_001699_170 Hb_001699_170 Hb_000800_010--Hb_001699_170 Hb_132840_030 Hb_132840_030 Hb_000800_010--Hb_132840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91434 9.64944 10.29 16.8941 0.814347 1.13674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06524 4.72582 1.80426 5.01194 13.5635

CAGE analysis