Hb_000227_280

Information

Type -
Description -
Location Contig227: 250294-254131
Sequence    

Annotation

kegg
ID rcu:RCOM_0913960
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012069584.1
description PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
swissprot
ID Q9ZQQ7
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=3 SV=1
trembl
ID A0A067KVA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02144 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at1g67720

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23630: 251360-254407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_280 0.0 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
2 Hb_005488_130 0.0876576462 - - transporter, putative [Ricinus communis]
3 Hb_007894_070 0.1051828152 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
4 Hb_003001_130 0.1067402434 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000283_140 0.1134699808 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
6 Hb_000028_430 0.1166189914 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
7 Hb_004241_110 0.1166772137 - - Minor allergen Alt a, putative [Ricinus communis]
8 Hb_000941_120 0.1180387822 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
9 Hb_006414_010 0.118570939 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
10 Hb_007101_260 0.126040909 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
11 Hb_004943_040 0.127209394 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
12 Hb_000140_060 0.1274498674 - - 50S ribosomal protein L5, putative [Ricinus communis]
13 Hb_020378_020 0.1284333173 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_001677_040 0.1290717337 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
15 Hb_002026_030 0.1340098813 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
16 Hb_001250_080 0.134311249 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
17 Hb_000271_220 0.1350691465 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
18 Hb_000800_010 0.1366291639 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
19 Hb_001195_660 0.1372718048 - - metalloendopeptidase, putative [Ricinus communis]
20 Hb_003006_090 0.1375317097 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_280 Hb_000227_280 Hb_005488_130 Hb_005488_130 Hb_000227_280--Hb_005488_130 Hb_007894_070 Hb_007894_070 Hb_000227_280--Hb_007894_070 Hb_003001_130 Hb_003001_130 Hb_000227_280--Hb_003001_130 Hb_000283_140 Hb_000283_140 Hb_000227_280--Hb_000283_140 Hb_000028_430 Hb_000028_430 Hb_000227_280--Hb_000028_430 Hb_004241_110 Hb_004241_110 Hb_000227_280--Hb_004241_110 Hb_000140_060 Hb_000140_060 Hb_005488_130--Hb_000140_060 Hb_000272_030 Hb_000272_030 Hb_005488_130--Hb_000272_030 Hb_004678_010 Hb_004678_010 Hb_005488_130--Hb_004678_010 Hb_005488_130--Hb_007894_070 Hb_001153_100 Hb_001153_100 Hb_005488_130--Hb_001153_100 Hb_006414_010 Hb_006414_010 Hb_007894_070--Hb_006414_010 Hb_000210_040 Hb_000210_040 Hb_007894_070--Hb_000210_040 Hb_000659_040 Hb_000659_040 Hb_007894_070--Hb_000659_040 Hb_007894_070--Hb_004241_110 Hb_001318_100 Hb_001318_100 Hb_007894_070--Hb_001318_100 Hb_000603_020 Hb_000603_020 Hb_003001_130--Hb_000603_020 Hb_000928_120 Hb_000928_120 Hb_003001_130--Hb_000928_120 Hb_003001_130--Hb_000283_140 Hb_003001_130--Hb_004241_110 Hb_000271_220 Hb_000271_220 Hb_003001_130--Hb_000271_220 Hb_012807_150 Hb_012807_150 Hb_000283_140--Hb_012807_150 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000283_140--Hb_000928_120 Hb_000283_140--Hb_000271_220 Hb_005054_020 Hb_005054_020 Hb_000028_430--Hb_005054_020 Hb_001250_080 Hb_001250_080 Hb_000028_430--Hb_001250_080 Hb_000028_430--Hb_000928_120 Hb_000028_430--Hb_003001_130 Hb_003849_190 Hb_003849_190 Hb_000028_430--Hb_003849_190 Hb_084147_010 Hb_084147_010 Hb_004241_110--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_004241_110--Hb_012395_110 Hb_004241_110--Hb_001318_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0802701 2.25835 2.66028 4.80528 0.170518 0.207186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304042 0.458503 0.565359 0.889209 3.98934

CAGE analysis