Hb_000210_040

Information

Type -
Description -
Location Contig210: 78291-81653
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07340g
description POPTRDRAFT_256352; hypothetical protein
nr
ID XP_012074349.1
description PREDICTED: putative HVA22-like protein g [Jatropha curcas]
swissprot
ID Q8GXE9
description HVA22-like protein j OS=Arabidopsis thaliana GN=HVA22J PE=2 SV=2
trembl
ID B9IIN9
description HVA22-like protein OS=Populus trichocarpa GN=POPTR_0016s07340g PE=3 SV=2
Gene Ontology
ID GO:0016021
description hva22-like protein g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21727: 79839-80689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_040 0.0 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
2 Hb_007894_070 0.1000135659 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
3 Hb_003607_140 0.1035653701 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
4 Hb_006414_010 0.1067523976 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
5 Hb_004421_010 0.1175665043 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_003879_020 0.1185427603 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
7 Hb_000659_040 0.1226060037 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
8 Hb_002316_020 0.125195965 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
9 Hb_010174_180 0.1291586952 - - protein binding protein, putative [Ricinus communis]
10 Hb_000398_140 0.1322762064 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
11 Hb_010557_020 0.1328091148 - - Mlo protein [Hevea brasiliensis]
12 Hb_001956_080 0.1350408892 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
13 Hb_007479_080 0.1374531727 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
14 Hb_005488_030 0.1384217082 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
15 Hb_144449_010 0.1395382302 - - Potassium transporter, putative [Ricinus communis]
16 Hb_001440_010 0.1407128332 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
17 Hb_000202_070 0.1435265844 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
18 Hb_187959_010 0.1456184865 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
19 Hb_000077_400 0.1459958808 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_000342_020 0.146206944 - - bel1 homeotic protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000210_040 Hb_000210_040 Hb_007894_070 Hb_007894_070 Hb_000210_040--Hb_007894_070 Hb_003607_140 Hb_003607_140 Hb_000210_040--Hb_003607_140 Hb_006414_010 Hb_006414_010 Hb_000210_040--Hb_006414_010 Hb_004421_010 Hb_004421_010 Hb_000210_040--Hb_004421_010 Hb_003879_020 Hb_003879_020 Hb_000210_040--Hb_003879_020 Hb_000659_040 Hb_000659_040 Hb_000210_040--Hb_000659_040 Hb_007894_070--Hb_006414_010 Hb_000227_280 Hb_000227_280 Hb_007894_070--Hb_000227_280 Hb_007894_070--Hb_000659_040 Hb_004241_110 Hb_004241_110 Hb_007894_070--Hb_004241_110 Hb_001318_100 Hb_001318_100 Hb_007894_070--Hb_001318_100 Hb_010174_180 Hb_010174_180 Hb_003607_140--Hb_010174_180 Hb_006469_090 Hb_006469_090 Hb_003607_140--Hb_006469_090 Hb_001439_010 Hb_001439_010 Hb_003607_140--Hb_001439_010 Hb_002635_020 Hb_002635_020 Hb_003607_140--Hb_002635_020 Hb_002316_020 Hb_002316_020 Hb_003607_140--Hb_002316_020 Hb_001486_100 Hb_001486_100 Hb_006414_010--Hb_001486_100 Hb_000800_010 Hb_000800_010 Hb_006414_010--Hb_000800_010 Hb_002740_100 Hb_002740_100 Hb_006414_010--Hb_002740_100 Hb_006414_010--Hb_000659_040 Hb_000398_140 Hb_000398_140 Hb_004421_010--Hb_000398_140 Hb_001776_100 Hb_001776_100 Hb_004421_010--Hb_001776_100 Hb_001956_080 Hb_001956_080 Hb_004421_010--Hb_001956_080 Hb_000613_250 Hb_000613_250 Hb_004421_010--Hb_000613_250 Hb_012743_020 Hb_012743_020 Hb_004421_010--Hb_012743_020 Hb_000472_020 Hb_000472_020 Hb_004421_010--Hb_000472_020 Hb_003879_020--Hb_001439_010 Hb_003879_020--Hb_000398_140 Hb_000731_210 Hb_000731_210 Hb_003879_020--Hb_000731_210 Hb_003879_020--Hb_003607_140 Hb_003879_020--Hb_010174_180 Hb_003147_040 Hb_003147_040 Hb_000659_040--Hb_003147_040 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000272_030 Hb_000272_030 Hb_000659_040--Hb_000272_030 Hb_000659_040--Hb_001318_100 Hb_000856_200 Hb_000856_200 Hb_000659_040--Hb_000856_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0611853 5.22441 6.49747 9.42101 0.0114585 0.0348519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.194961 0.942246 0.206592 5.07527 8.10014

CAGE analysis