Hb_000731_210

Information

Type -
Description -
Location Contig731: 192391-197677
Sequence    

Annotation

kegg
ID rcu:RCOM_0905240
description hypothetical protein
nr
ID XP_002518505.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q402F4
description Tobamovirus multiplication protein 1 OS=Nicotiana tabacum GN=TOM1 PE=1 SV=1
trembl
ID B9RXN6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0905240 PE=4 SV=1
Gene Ontology
ID GO:0009705
description tobamovirus multiplication protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55983: 192560-197686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002301_370 0.0891607402 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
3 Hb_000024_130 0.0960557123 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001048_100 0.1026910402 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
5 Hb_031385_010 0.1028057206 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
6 Hb_000318_170 0.104790875 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
7 Hb_003106_230 0.108887608 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
8 Hb_010174_180 0.1089818891 - - protein binding protein, putative [Ricinus communis]
9 Hb_003879_020 0.1120152441 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
10 Hb_000760_080 0.1128587681 - - mutt domain protein, putative [Ricinus communis]
11 Hb_003607_140 0.1153844451 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
12 Hb_000230_360 0.1154511687 - - PREDICTED: BI1-like protein [Jatropha curcas]
13 Hb_002316_020 0.1190934272 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
14 Hb_006528_020 0.1195996606 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007575_030 0.1215306846 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
16 Hb_005333_080 0.1220664114 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010672_050 0.1240375544 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
18 Hb_000002_350 0.1246897994 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
19 Hb_000834_220 0.1267330253 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
20 Hb_001440_010 0.1281919163 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_000731_210 Hb_000731_210 Hb_002301_370 Hb_002301_370 Hb_000731_210--Hb_002301_370 Hb_000024_130 Hb_000024_130 Hb_000731_210--Hb_000024_130 Hb_001048_100 Hb_001048_100 Hb_000731_210--Hb_001048_100 Hb_031385_010 Hb_031385_010 Hb_000731_210--Hb_031385_010 Hb_000318_170 Hb_000318_170 Hb_000731_210--Hb_000318_170 Hb_003106_230 Hb_003106_230 Hb_000731_210--Hb_003106_230 Hb_000230_360 Hb_000230_360 Hb_002301_370--Hb_000230_360 Hb_001440_010 Hb_001440_010 Hb_002301_370--Hb_001440_010 Hb_002301_370--Hb_031385_010 Hb_002301_370--Hb_001048_100 Hb_000398_140 Hb_000398_140 Hb_002301_370--Hb_000398_140 Hb_000760_080 Hb_000760_080 Hb_000024_130--Hb_000760_080 Hb_007575_030 Hb_007575_030 Hb_000024_130--Hb_007575_030 Hb_000024_130--Hb_003106_230 Hb_042202_020 Hb_042202_020 Hb_000024_130--Hb_042202_020 Hb_003142_060 Hb_003142_060 Hb_000024_130--Hb_003142_060 Hb_001048_100--Hb_031385_010 Hb_001048_100--Hb_000760_080 Hb_001048_100--Hb_000230_360 Hb_000061_310 Hb_000061_310 Hb_001048_100--Hb_000061_310 Hb_031385_010--Hb_000230_360 Hb_031385_010--Hb_000061_310 Hb_002316_020 Hb_002316_020 Hb_031385_010--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_031385_010--Hb_010174_180 Hb_003687_040 Hb_003687_040 Hb_031385_010--Hb_003687_040 Hb_005485_070 Hb_005485_070 Hb_000318_170--Hb_005485_070 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000309_030 Hb_000309_030 Hb_000318_170--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000318_170--Hb_000116_240 Hb_000318_170--Hb_007575_030 Hb_003106_230--Hb_003142_060 Hb_003106_230--Hb_000318_170 Hb_001008_110 Hb_001008_110 Hb_003106_230--Hb_001008_110 Hb_000085_380 Hb_000085_380 Hb_003106_230--Hb_000085_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113932 6.57682 12.5663 11.9703 0.175978 0.644249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.728496 0.409355 0.56193 9.96958 7.33543

CAGE analysis