Hb_002301_370

Information

Type -
Description -
Location Contig2301: 342702-348549
Sequence    

Annotation

kegg
ID rcu:RCOM_1674150
description smg-7, putative
nr
ID KDP20983.1
description hypothetical protein JCGZ_21454 [Jatropha curcas]
swissprot
ID Q9FZ99
description Protein SMG7L OS=Arabidopsis thaliana GN=SMG7L PE=2 SV=1
trembl
ID A0A067JDZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21454 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24182: 345990-348481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_370 0.0 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
2 Hb_000230_360 0.0760076296 - - PREDICTED: BI1-like protein [Jatropha curcas]
3 Hb_000731_210 0.0891607402 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001440_010 0.0895475008 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
5 Hb_031385_010 0.1042828997 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
6 Hb_001048_100 0.1046806579 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
7 Hb_000398_140 0.1062695324 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
8 Hb_001019_160 0.1074198814 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000739_160 0.1074365118 - - DNA binding protein, putative [Ricinus communis]
10 Hb_003656_090 0.1091009198 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
11 Hb_003106_110 0.1107798003 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
12 Hb_000834_220 0.110856098 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
13 Hb_010174_180 0.1131693884 - - protein binding protein, putative [Ricinus communis]
14 Hb_001638_150 0.114081991 - - acyltransferase, putative [Ricinus communis]
15 Hb_000061_310 0.1149250894 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
16 Hb_030982_050 0.1189912892 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
17 Hb_002316_020 0.1199503084 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
18 Hb_014250_010 0.1218904017 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
19 Hb_003607_140 0.1230781426 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
20 Hb_003687_040 0.1234340451 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_370 Hb_002301_370 Hb_000230_360 Hb_000230_360 Hb_002301_370--Hb_000230_360 Hb_000731_210 Hb_000731_210 Hb_002301_370--Hb_000731_210 Hb_001440_010 Hb_001440_010 Hb_002301_370--Hb_001440_010 Hb_031385_010 Hb_031385_010 Hb_002301_370--Hb_031385_010 Hb_001048_100 Hb_001048_100 Hb_002301_370--Hb_001048_100 Hb_000398_140 Hb_000398_140 Hb_002301_370--Hb_000398_140 Hb_000061_310 Hb_000061_310 Hb_000230_360--Hb_000061_310 Hb_000230_360--Hb_031385_010 Hb_000230_360--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_000230_360--Hb_000834_220 Hb_001019_160 Hb_001019_160 Hb_000230_360--Hb_001019_160 Hb_000024_130 Hb_000024_130 Hb_000731_210--Hb_000024_130 Hb_000731_210--Hb_001048_100 Hb_000731_210--Hb_031385_010 Hb_000318_170 Hb_000318_170 Hb_000731_210--Hb_000318_170 Hb_003106_230 Hb_003106_230 Hb_000731_210--Hb_003106_230 Hb_001440_010--Hb_000834_220 Hb_001946_200 Hb_001946_200 Hb_001440_010--Hb_001946_200 Hb_003656_090 Hb_003656_090 Hb_001440_010--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_001440_010--Hb_001936_180 Hb_022092_110 Hb_022092_110 Hb_001440_010--Hb_022092_110 Hb_031385_010--Hb_001048_100 Hb_031385_010--Hb_000061_310 Hb_002316_020 Hb_002316_020 Hb_031385_010--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_031385_010--Hb_010174_180 Hb_003687_040 Hb_003687_040 Hb_031385_010--Hb_003687_040 Hb_000760_080 Hb_000760_080 Hb_001048_100--Hb_000760_080 Hb_001048_100--Hb_000230_360 Hb_001048_100--Hb_000061_310 Hb_004421_010 Hb_004421_010 Hb_000398_140--Hb_004421_010 Hb_059000_010 Hb_059000_010 Hb_000398_140--Hb_059000_010 Hb_001141_160 Hb_001141_160 Hb_000398_140--Hb_001141_160 Hb_001189_100 Hb_001189_100 Hb_000398_140--Hb_001189_100 Hb_004122_060 Hb_004122_060 Hb_000398_140--Hb_004122_060 Hb_012743_020 Hb_012743_020 Hb_000398_140--Hb_012743_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134139 5.90125 9.8795 9.65292 0.293789 0.318532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0996259 0.111998 0.107153 7.19994 5.61735

CAGE analysis