Hb_000318_170

Information

Type -
Description -
Location Contig318: 159427-165998
Sequence    

Annotation

kegg
ID rcu:RCOM_0773980
description N-acetyl-gamma-glutamyl-phosphate reductase, putative (EC:1.2.1.38)
nr
ID XP_002521834.1
description N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
swissprot
ID Q93Z70
description Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=At2g19940 PE=1 SV=2
trembl
ID B9S765
description N-acetyl-gamma-glutamyl-phosphate reductase OS=Ricinus communis GN=RCOM_0773980 PE=3 SV=1
Gene Ontology
ID GO:0005730
description probable n-acetyl-gamma-glutamyl-phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33509: 159523-165921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_170 0.0 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
2 Hb_005485_070 0.0892891076 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
3 Hb_000791_050 0.0960866923 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
4 Hb_000309_030 0.1005803153 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
5 Hb_000116_240 0.1036569103 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
6 Hb_000731_210 0.104790875 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007575_030 0.1051280309 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
8 Hb_001221_390 0.1069319104 - - Phospholipase C 4 precursor, putative [Ricinus communis]
9 Hb_000085_380 0.1074191574 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012760_090 0.1095902139 - - Aspartic proteinase-like protein 1 [Morus notabilis]
11 Hb_000438_010 0.1100035854 - - -
12 Hb_003106_230 0.1145047944 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
13 Hb_000230_360 0.121072923 - - PREDICTED: BI1-like protein [Jatropha curcas]
14 Hb_004883_020 0.1210944298 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
15 Hb_000261_310 0.1211815787 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
16 Hb_010050_020 0.1228885449 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
17 Hb_003106_110 0.1238225945 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
18 Hb_000003_020 0.1275384553 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
19 Hb_001277_400 0.1296533539 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
20 Hb_005333_080 0.1312974793 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000318_170 Hb_000318_170 Hb_005485_070 Hb_005485_070 Hb_000318_170--Hb_005485_070 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000309_030 Hb_000309_030 Hb_000318_170--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000318_170--Hb_000116_240 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_007575_030 Hb_007575_030 Hb_000318_170--Hb_007575_030 Hb_005485_070--Hb_000116_240 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_000590_070 Hb_000590_070 Hb_005485_070--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_005485_070--Hb_001277_400 Hb_003106_110 Hb_003106_110 Hb_005485_070--Hb_003106_110 Hb_001221_390 Hb_001221_390 Hb_000791_050--Hb_001221_390 Hb_027380_150 Hb_027380_150 Hb_000791_050--Hb_027380_150 Hb_000737_010 Hb_000737_010 Hb_000791_050--Hb_000737_010 Hb_010050_020 Hb_010050_020 Hb_000791_050--Hb_010050_020 Hb_000438_010 Hb_000438_010 Hb_000791_050--Hb_000438_010 Hb_000309_030--Hb_000116_240 Hb_000261_310 Hb_000261_310 Hb_000309_030--Hb_000261_310 Hb_004883_020 Hb_004883_020 Hb_000309_030--Hb_004883_020 Hb_000309_030--Hb_010050_020 Hb_000309_030--Hb_000590_070 Hb_000116_240--Hb_000590_070 Hb_000116_240--Hb_001277_400 Hb_000116_240--Hb_000261_310 Hb_002301_370 Hb_002301_370 Hb_000731_210--Hb_002301_370 Hb_000024_130 Hb_000024_130 Hb_000731_210--Hb_000024_130 Hb_001048_100 Hb_001048_100 Hb_000731_210--Hb_001048_100 Hb_031385_010 Hb_031385_010 Hb_000731_210--Hb_031385_010 Hb_003106_230 Hb_003106_230 Hb_000731_210--Hb_003106_230 Hb_007575_030--Hb_004883_020 Hb_007575_030--Hb_000261_310 Hb_000165_070 Hb_000165_070 Hb_007575_030--Hb_000165_070 Hb_007575_030--Hb_000116_240 Hb_000042_380 Hb_000042_380 Hb_007575_030--Hb_000042_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.796211 5.22561 9.2439 10.5879 0.620438 0.784592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18828 0.22802 0.343546 8.67552 6.50461

CAGE analysis