Hb_000042_380

Information

Type -
Description -
Location Contig42: 347784-351753
Sequence    

Annotation

kegg
ID rcu:RCOM_1407250
description hypothetical protein
nr
ID XP_012079216.1
description PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
swissprot
ID Q8GUM4
description Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2
trembl
ID A0A067K6Q0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12377 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41490: 348254-348873 , PASA_asmbl_41491: 349824-350867 , PASA_asmbl_41493: 351194-351535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_380 0.0 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
2 Hb_008695_150 0.0988999992 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
3 Hb_005545_020 0.1065553684 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
4 Hb_007575_030 0.1077363928 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
5 Hb_001277_400 0.1110394954 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
6 Hb_005568_050 0.11186101 - - ascorbate peroxidase [Hevea brasiliensis]
7 Hb_004883_020 0.1219471574 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
8 Hb_000116_240 0.1304965965 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
9 Hb_005485_070 0.1319295569 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
10 Hb_001439_010 0.1325889752 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
11 Hb_001675_270 0.1328756427 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
12 Hb_001754_050 0.1363796264 - - protein arginine n-methyltransferase, putative [Ricinus communis]
13 Hb_003879_020 0.1373633088 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
14 Hb_001048_100 0.1407137324 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
15 Hb_012053_020 0.1408422959 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
16 Hb_000720_090 0.1433928229 transcription factor TF Family: MYB myb, putative [Ricinus communis]
17 Hb_003299_020 0.1436897349 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
18 Hb_000731_210 0.1454203753 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001360_030 0.1485233714 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
20 Hb_000077_400 0.1491355996 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000042_380 Hb_000042_380 Hb_008695_150 Hb_008695_150 Hb_000042_380--Hb_008695_150 Hb_005545_020 Hb_005545_020 Hb_000042_380--Hb_005545_020 Hb_007575_030 Hb_007575_030 Hb_000042_380--Hb_007575_030 Hb_001277_400 Hb_001277_400 Hb_000042_380--Hb_001277_400 Hb_005568_050 Hb_005568_050 Hb_000042_380--Hb_005568_050 Hb_004883_020 Hb_004883_020 Hb_000042_380--Hb_004883_020 Hb_005485_070 Hb_005485_070 Hb_008695_150--Hb_005485_070 Hb_005333_080 Hb_005333_080 Hb_008695_150--Hb_005333_080 Hb_000116_240 Hb_000116_240 Hb_008695_150--Hb_000116_240 Hb_001439_010 Hb_001439_010 Hb_008695_150--Hb_001439_010 Hb_000731_210 Hb_000731_210 Hb_008695_150--Hb_000731_210 Hb_003299_020 Hb_003299_020 Hb_005545_020--Hb_003299_020 Hb_000753_110 Hb_000753_110 Hb_005545_020--Hb_000753_110 Hb_001754_050 Hb_001754_050 Hb_005545_020--Hb_001754_050 Hb_005545_020--Hb_004883_020 Hb_005545_020--Hb_007575_030 Hb_007575_030--Hb_004883_020 Hb_000261_310 Hb_000261_310 Hb_007575_030--Hb_000261_310 Hb_000165_070 Hb_000165_070 Hb_007575_030--Hb_000165_070 Hb_007575_030--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_007575_030--Hb_000318_170 Hb_001277_400--Hb_000116_240 Hb_001277_400--Hb_005485_070 Hb_001277_400--Hb_007575_030 Hb_001277_400--Hb_004883_020 Hb_000590_070 Hb_000590_070 Hb_001277_400--Hb_000590_070 Hb_001675_270 Hb_001675_270 Hb_005568_050--Hb_001675_270 Hb_000760_080 Hb_000760_080 Hb_005568_050--Hb_000760_080 Hb_003607_140 Hb_003607_140 Hb_005568_050--Hb_003607_140 Hb_010174_180 Hb_010174_180 Hb_005568_050--Hb_010174_180 Hb_002316_020 Hb_002316_020 Hb_005568_050--Hb_002316_020 Hb_004883_020--Hb_001754_050 Hb_000309_030 Hb_000309_030 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190148 1.87025 5.87924 4.40433 0.376042 0.242476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225036 0.676087 0.581307 5.78477 4.53585

CAGE analysis