Hb_005333_080

Information

Type -
Description -
Location Contig5333: 67512-80636
Sequence    

Annotation

kegg
ID rcu:RCOM_1039150
description hypothetical protein
nr
ID XP_002514022.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4JQZ3
description Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana GN=REN1 PE=1 SV=2
trembl
ID B9RJV3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039150 PE=4 SV=1
Gene Ontology
ID GO:0005096
description rho gtpase-activating protein ren1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47471: 77350-78206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010672_050 0.0802642442 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
3 Hb_012760_090 0.0879115956 - - Aspartic proteinase-like protein 1 [Morus notabilis]
4 Hb_158092_040 0.1094542643 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
5 Hb_008695_150 0.1128546785 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
6 Hb_000116_240 0.1152362821 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
7 Hb_001019_160 0.116233274 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000731_210 0.1220664114 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005485_070 0.122266685 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
10 Hb_000834_220 0.128083083 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
11 Hb_001597_030 0.1290955904 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
12 Hb_003411_020 0.1292163023 - - alpha-glucosidase, putative [Ricinus communis]
13 Hb_143766_080 0.1306204933 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
14 Hb_000318_170 0.1312974793 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
15 Hb_005839_030 0.1346048565 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
16 Hb_000997_240 0.134786042 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
17 Hb_000203_070 0.1351468423 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
18 Hb_034507_060 0.1364725717 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
19 Hb_004079_100 0.1367227325 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
20 Hb_012395_050 0.1367835703 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]

Gene co-expression network

sample Hb_005333_080 Hb_005333_080 Hb_010672_050 Hb_010672_050 Hb_005333_080--Hb_010672_050 Hb_012760_090 Hb_012760_090 Hb_005333_080--Hb_012760_090 Hb_158092_040 Hb_158092_040 Hb_005333_080--Hb_158092_040 Hb_008695_150 Hb_008695_150 Hb_005333_080--Hb_008695_150 Hb_000116_240 Hb_000116_240 Hb_005333_080--Hb_000116_240 Hb_001019_160 Hb_001019_160 Hb_005333_080--Hb_001019_160 Hb_003299_020 Hb_003299_020 Hb_010672_050--Hb_003299_020 Hb_010672_050--Hb_001019_160 Hb_010672_050--Hb_012760_090 Hb_000735_060 Hb_000735_060 Hb_010672_050--Hb_000735_060 Hb_011174_040 Hb_011174_040 Hb_010672_050--Hb_011174_040 Hb_002641_160 Hb_002641_160 Hb_012760_090--Hb_002641_160 Hb_010050_020 Hb_010050_020 Hb_012760_090--Hb_010050_020 Hb_034507_060 Hb_034507_060 Hb_012760_090--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_012760_090--Hb_004218_130 Hb_000318_170 Hb_000318_170 Hb_012760_090--Hb_000318_170 Hb_080477_080 Hb_080477_080 Hb_158092_040--Hb_080477_080 Hb_006615_230 Hb_006615_230 Hb_158092_040--Hb_006615_230 Hb_001119_070 Hb_001119_070 Hb_158092_040--Hb_001119_070 Hb_004522_030 Hb_004522_030 Hb_158092_040--Hb_004522_030 Hb_134014_010 Hb_134014_010 Hb_158092_040--Hb_134014_010 Hb_000042_380 Hb_000042_380 Hb_008695_150--Hb_000042_380 Hb_005485_070 Hb_005485_070 Hb_008695_150--Hb_005485_070 Hb_008695_150--Hb_000116_240 Hb_001439_010 Hb_001439_010 Hb_008695_150--Hb_001439_010 Hb_000731_210 Hb_000731_210 Hb_008695_150--Hb_000731_210 Hb_000116_240--Hb_005485_070 Hb_000309_030 Hb_000309_030 Hb_000116_240--Hb_000309_030 Hb_000590_070 Hb_000590_070 Hb_000116_240--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_000116_240--Hb_001277_400 Hb_000261_310 Hb_000261_310 Hb_000116_240--Hb_000261_310 Hb_000116_240--Hb_000318_170 Hb_003687_040 Hb_003687_040 Hb_001019_160--Hb_003687_040 Hb_000834_220 Hb_000834_220 Hb_001019_160--Hb_000834_220 Hb_000230_360 Hb_000230_360 Hb_001019_160--Hb_000230_360 Hb_031385_010 Hb_031385_010 Hb_001019_160--Hb_031385_010 Hb_001440_010 Hb_001440_010 Hb_001019_160--Hb_001440_010 Hb_000061_310 Hb_000061_310 Hb_001019_160--Hb_000061_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.042226 0.530798 1.22095 1.8467 0.0723342 0.0555412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0460643 0.0724974 0.115462 1.0259 0.643853

CAGE analysis