Hb_001119_070

Information

Type -
Description -
Location Contig1119: 139175-145268
Sequence    

Annotation

kegg
ID rcu:RCOM_0364940
description methylenetetrahydrofolate reductase, putative (EC:1.5.1.20)
nr
ID XP_002529223.1
description methylenetetrahydrofolate reductase, putative [Ricinus communis]
swissprot
ID O80585
description Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2
trembl
ID B9STA4
description Methylenetetrahydrofolate reductase OS=Ricinus communis GN=RCOM_0364940 PE=3 SV=1
Gene Ontology
ID GO:0005829
description methylenetetrahydrofolate reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03604: 139385-145119
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001119_070 0.0 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
2 Hb_006351_020 0.0864876124 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
3 Hb_006615_230 0.0995900167 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
4 Hb_158092_040 0.1048199889 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
5 Hb_000806_130 0.1089712282 - - Adenosine kinase 2 [Theobroma cacao]
6 Hb_000696_070 0.109556448 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
7 Hb_189003_070 0.115379421 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
8 Hb_000236_180 0.1161628399 - - serine hydroxymethyltransferase, putative [Ricinus communis]
9 Hb_001545_130 0.1198894696 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
10 Hb_004522_030 0.1201614775 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
11 Hb_134014_010 0.1246874094 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
12 Hb_000679_040 0.1252703036 - - Cellulose synthase 1 [Theobroma cacao]
13 Hb_000236_190 0.1271724276 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
14 Hb_003470_110 0.127358241 - - unnamed protein product [Vitis vinifera]
15 Hb_028639_030 0.1276406768 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
16 Hb_006889_030 0.1283162926 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
17 Hb_000327_360 0.1328221206 - - unnamed protein product [Coffea canephora]
18 Hb_001329_180 0.1348289345 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
19 Hb_000152_710 0.1349407073 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
20 Hb_001216_110 0.135502209 - - PREDICTED: protein GPR107-like [Jatropha curcas]

Gene co-expression network

sample Hb_001119_070 Hb_001119_070 Hb_006351_020 Hb_006351_020 Hb_001119_070--Hb_006351_020 Hb_006615_230 Hb_006615_230 Hb_001119_070--Hb_006615_230 Hb_158092_040 Hb_158092_040 Hb_001119_070--Hb_158092_040 Hb_000806_130 Hb_000806_130 Hb_001119_070--Hb_000806_130 Hb_000696_070 Hb_000696_070 Hb_001119_070--Hb_000696_070 Hb_189003_070 Hb_189003_070 Hb_001119_070--Hb_189003_070 Hb_001545_130 Hb_001545_130 Hb_006351_020--Hb_001545_130 Hb_003929_180 Hb_003929_180 Hb_006351_020--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_006351_020--Hb_004223_140 Hb_004032_210 Hb_004032_210 Hb_006351_020--Hb_004032_210 Hb_000152_190 Hb_000152_190 Hb_006351_020--Hb_000152_190 Hb_134014_010 Hb_134014_010 Hb_006615_230--Hb_134014_010 Hb_006615_230--Hb_189003_070 Hb_098795_030 Hb_098795_030 Hb_006615_230--Hb_098795_030 Hb_006615_230--Hb_158092_040 Hb_002495_030 Hb_002495_030 Hb_006615_230--Hb_002495_030 Hb_080477_080 Hb_080477_080 Hb_158092_040--Hb_080477_080 Hb_005333_080 Hb_005333_080 Hb_158092_040--Hb_005333_080 Hb_004522_030 Hb_004522_030 Hb_158092_040--Hb_004522_030 Hb_158092_040--Hb_134014_010 Hb_001486_350 Hb_001486_350 Hb_000806_130--Hb_001486_350 Hb_001329_180 Hb_001329_180 Hb_000806_130--Hb_001329_180 Hb_000806_130--Hb_000696_070 Hb_000236_190 Hb_000236_190 Hb_000806_130--Hb_000236_190 Hb_000300_420 Hb_000300_420 Hb_000806_130--Hb_000300_420 Hb_002781_050 Hb_002781_050 Hb_000696_070--Hb_002781_050 Hb_001369_630 Hb_001369_630 Hb_000696_070--Hb_001369_630 Hb_000696_070--Hb_001486_350 Hb_026527_010 Hb_026527_010 Hb_000696_070--Hb_026527_010 Hb_006736_050 Hb_006736_050 Hb_189003_070--Hb_006736_050 Hb_189003_070--Hb_134014_010 Hb_036388_010 Hb_036388_010 Hb_189003_070--Hb_036388_010 Hb_000417_380 Hb_000417_380 Hb_189003_070--Hb_000417_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4252 36.3314 90.1238 287.759 17.2185 15.4145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8448 13.417 24.2965 90.9703 107.631

CAGE analysis