Hb_002781_050

Information

Type -
Description -
Location Contig2781: 41526-44508
Sequence    

Annotation

kegg
ID rcu:RCOM_1720370
description cytochrome B5 isoform 1, putative (EC:1.7.1.1)
nr
ID XP_002521096.1
description cytochrome B5 isoform 1, putative [Ricinus communis]
swissprot
ID P49098
description Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9S527
description Cytochrome B5 isoform 1, putative OS=Ricinus communis GN=RCOM_1720370 PE=3 SV=1
Gene Ontology
ID GO:0005789
description cytochrome b5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29024: 41531-44394
cDNA
(Sanger)
(ID:Location)		 010_P13.ab1: 41592-44388 , 038_J10.ab1: 41531-44388 , 052_F24.ab1: 41659-44382

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002781_050 0.0 - - cytochrome B5 isoform 1, putative [Ricinus communis]
2 Hb_000696_070 0.0899010146 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
3 Hb_003602_020 0.1171331888 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Jatropha curcas]
4 Hb_001148_100 0.1179331806 - - -
5 Hb_001148_090 0.1235278153 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
6 Hb_001369_630 0.127138795 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
7 Hb_048476_060 0.1307805686 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
8 Hb_000027_210 0.1317709272 - - Os01g0689300, partial [Oryza sativa Japonica Group]
9 Hb_001486_350 0.1345122368 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
10 Hb_003207_020 0.1347225456 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
11 Hb_147245_010 0.1363862556 - - casein kinase, putative [Ricinus communis]
12 Hb_000806_130 0.1393499545 - - Adenosine kinase 2 [Theobroma cacao]
13 Hb_001486_040 0.1406314515 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
14 Hb_007537_030 0.1428374413 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
15 Hb_026527_010 0.1437133081 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
16 Hb_012707_040 0.1450907276 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
17 Hb_003371_070 0.1467648344 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
18 Hb_001946_310 0.1483245205 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
19 Hb_002151_060 0.1485546305 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
20 Hb_000049_160 0.1500863499 - - tyrosine decarboxylase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002781_050 Hb_002781_050 Hb_000696_070 Hb_000696_070 Hb_002781_050--Hb_000696_070 Hb_003602_020 Hb_003602_020 Hb_002781_050--Hb_003602_020 Hb_001148_100 Hb_001148_100 Hb_002781_050--Hb_001148_100 Hb_001148_090 Hb_001148_090 Hb_002781_050--Hb_001148_090 Hb_001369_630 Hb_001369_630 Hb_002781_050--Hb_001369_630 Hb_048476_060 Hb_048476_060 Hb_002781_050--Hb_048476_060 Hb_000806_130 Hb_000806_130 Hb_000696_070--Hb_000806_130 Hb_001119_070 Hb_001119_070 Hb_000696_070--Hb_001119_070 Hb_000696_070--Hb_001369_630 Hb_001486_350 Hb_001486_350 Hb_000696_070--Hb_001486_350 Hb_026527_010 Hb_026527_010 Hb_000696_070--Hb_026527_010 Hb_000049_160 Hb_000049_160 Hb_003602_020--Hb_000049_160 Hb_008025_010 Hb_008025_010 Hb_003602_020--Hb_008025_010 Hb_002193_060 Hb_002193_060 Hb_003602_020--Hb_002193_060 Hb_003994_030 Hb_003994_030 Hb_003602_020--Hb_003994_030 Hb_001486_040 Hb_001486_040 Hb_003602_020--Hb_001486_040 Hb_001148_100--Hb_000696_070 Hb_000175_470 Hb_000175_470 Hb_001148_100--Hb_000175_470 Hb_002151_060 Hb_002151_060 Hb_001148_100--Hb_002151_060 Hb_158092_040 Hb_158092_040 Hb_001148_100--Hb_158092_040 Hb_001148_100--Hb_001148_090 Hb_000172_280 Hb_000172_280 Hb_001148_090--Hb_000172_280 Hb_000889_010 Hb_000889_010 Hb_001148_090--Hb_000889_010 Hb_004607_070 Hb_004607_070 Hb_001148_090--Hb_004607_070 Hb_001946_310 Hb_001946_310 Hb_001148_090--Hb_001946_310 Hb_002539_040 Hb_002539_040 Hb_001148_090--Hb_002539_040 Hb_000935_040 Hb_000935_040 Hb_001369_630--Hb_000935_040 Hb_002007_320 Hb_002007_320 Hb_001369_630--Hb_002007_320 Hb_000808_150 Hb_000808_150 Hb_001369_630--Hb_000808_150 Hb_003371_070 Hb_003371_070 Hb_001369_630--Hb_003371_070 Hb_001369_630--Hb_000049_160 Hb_048476_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_048476_060--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_048476_060--Hb_003207_020 Hb_000110_050 Hb_000110_050 Hb_048476_060--Hb_000110_050 Hb_000402_130 Hb_000402_130 Hb_048476_060--Hb_000402_130 Hb_048476_060--Hb_002007_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.19 37.6501 127.448 407.818 12.5981 21.1237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.9347 80.877 52.6495 186.997 168.307

CAGE analysis