Hb_000175_470

Information

Type -
Description -
Location Contig175: 330498-332615
Sequence    

Annotation

kegg
ID rcu:RCOM_0898830
description lactoylglutathione lyase, putative
nr
ID XP_002517606.1
description lactoylglutathione lyase, putative [Ricinus communis]
swissprot
ID Q8CXK5
description Metallothiol transferase FosB OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=fosB PE=3 SV=2
trembl
ID B9RV37
description Lactoylglutathione lyase, putative OS=Ricinus communis GN=RCOM_0898830 PE=4 SV=1
Gene Ontology
ID GO:0016740
description lactoylglutathione lyase glyoxalase i family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16722: 330442-332667 , PASA_asmbl_16723: 330480-332651
cDNA
(Sanger)
(ID:Location)		 002_I03.ab1: 330452-332386 , 003_H15.ab1: 330442-332472 , 038_B15.ab1: 330442-332441 , 049_K08.ab1: 330482-330711

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_470 0.0 - - lactoylglutathione lyase, putative [Ricinus communis]
2 Hb_002539_040 0.1157339201 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
3 Hb_001148_100 0.135350415 - - -
4 Hb_143766_080 0.1424201639 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
5 Hb_005408_070 0.14552814 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
6 Hb_172706_020 0.1455354855 - - PREDICTED: protein ABIL2 [Jatropha curcas]
7 Hb_000567_180 0.1483273405 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
8 Hb_002627_020 0.149148408 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
9 Hb_003710_020 0.1503997186 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
10 Hb_000116_560 0.1510367637 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
11 Hb_002602_030 0.1516546627 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
12 Hb_000220_110 0.1519263512 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
13 Hb_001148_090 0.1519974047 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
14 Hb_027380_190 0.1527664759 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
15 Hb_018845_010 0.1586308782 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
16 Hb_002518_090 0.1595605251 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
17 Hb_000940_210 0.1642736519 - - cyclophilin [Hevea brasiliensis]
18 Hb_007537_030 0.1644416318 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
19 Hb_001754_050 0.1650051069 - - protein arginine n-methyltransferase, putative [Ricinus communis]
20 Hb_001054_090 0.1658167669 - - Potassium channel SKOR, putative [Ricinus communis]

Gene co-expression network

sample Hb_000175_470 Hb_000175_470 Hb_002539_040 Hb_002539_040 Hb_000175_470--Hb_002539_040 Hb_001148_100 Hb_001148_100 Hb_000175_470--Hb_001148_100 Hb_143766_080 Hb_143766_080 Hb_000175_470--Hb_143766_080 Hb_005408_070 Hb_005408_070 Hb_000175_470--Hb_005408_070 Hb_172706_020 Hb_172706_020 Hb_000175_470--Hb_172706_020 Hb_000567_180 Hb_000567_180 Hb_000175_470--Hb_000567_180 Hb_002539_040--Hb_005408_070 Hb_001148_090 Hb_001148_090 Hb_002539_040--Hb_001148_090 Hb_002539_040--Hb_000567_180 Hb_000889_010 Hb_000889_010 Hb_002539_040--Hb_000889_010 Hb_002539_040--Hb_001148_100 Hb_002781_050 Hb_002781_050 Hb_001148_100--Hb_002781_050 Hb_000696_070 Hb_000696_070 Hb_001148_100--Hb_000696_070 Hb_002151_060 Hb_002151_060 Hb_001148_100--Hb_002151_060 Hb_158092_040 Hb_158092_040 Hb_001148_100--Hb_158092_040 Hb_001148_100--Hb_001148_090 Hb_001754_050 Hb_001754_050 Hb_143766_080--Hb_001754_050 Hb_003710_020 Hb_003710_020 Hb_143766_080--Hb_003710_020 Hb_004129_010 Hb_004129_010 Hb_143766_080--Hb_004129_010 Hb_004522_030 Hb_004522_030 Hb_143766_080--Hb_004522_030 Hb_000116_240 Hb_000116_240 Hb_143766_080--Hb_000116_240 Hb_004883_020 Hb_004883_020 Hb_143766_080--Hb_004883_020 Hb_005408_070--Hb_000567_180 Hb_001054_090 Hb_001054_090 Hb_005408_070--Hb_001054_090 Hb_000645_200 Hb_000645_200 Hb_005408_070--Hb_000645_200 Hb_005813_010 Hb_005813_010 Hb_005408_070--Hb_005813_010 Hb_000940_210 Hb_000940_210 Hb_172706_020--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_172706_020--Hb_023226_030 Hb_002518_090 Hb_002518_090 Hb_172706_020--Hb_002518_090 Hb_034507_060 Hb_034507_060 Hb_172706_020--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_172706_020--Hb_004218_130 Hb_000309_030 Hb_000309_030 Hb_172706_020--Hb_000309_030 Hb_001922_060 Hb_001922_060 Hb_000567_180--Hb_001922_060 Hb_000216_050 Hb_000216_050 Hb_000567_180--Hb_000216_050 Hb_026549_050 Hb_026549_050 Hb_000567_180--Hb_026549_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.88524 34.8948 70.3432 132.672 3.50309 8.3195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.921 49.4023 14.9571 92.0187 36.243

CAGE analysis