Hb_005813_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig5813: 20998-22712
Sequence    

Annotation

kegg
ID rcu:RCOM_0865060
description transcription factor, putative
nr
ID XP_002519841.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FFI5
description NAC domain-containing protein 86 OS=Arabidopsis thaliana GN=NAC086 PE=2 SV=1
trembl
ID B9S1H6
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0865060 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 74

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49874: 21646-21896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005813_010 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_002097_140 0.1491256765 - - CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]
3 Hb_007138_030 0.1635845159 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
4 Hb_000110_380 0.1643268054 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
5 Hb_122940_010 0.1690892868 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
6 Hb_005408_070 0.17195952 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
7 Hb_000567_180 0.1734276611 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
8 Hb_001898_140 0.1773127213 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
9 Hb_001148_100 0.1798855769 - - -
10 Hb_005784_060 0.1802988936 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
11 Hb_000181_210 0.1854969206 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
12 Hb_080477_080 0.1857843145 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
13 Hb_026549_050 0.1860791585 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
14 Hb_000110_290 0.1877408369 - - conserved hypothetical protein [Ricinus communis]
15 Hb_042509_020 0.1892657861 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
16 Hb_001922_060 0.1932607146 - - ATP binding protein, putative [Ricinus communis]
17 Hb_004324_030 0.1967655907 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
18 Hb_002539_040 0.1967798829 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
19 Hb_000002_360 0.1971653135 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
20 Hb_002686_260 0.1997970493 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]

Gene co-expression network

sample Hb_005813_010 Hb_005813_010 Hb_002097_140 Hb_002097_140 Hb_005813_010--Hb_002097_140 Hb_007138_030 Hb_007138_030 Hb_005813_010--Hb_007138_030 Hb_000110_380 Hb_000110_380 Hb_005813_010--Hb_000110_380 Hb_122940_010 Hb_122940_010 Hb_005813_010--Hb_122940_010 Hb_005408_070 Hb_005408_070 Hb_005813_010--Hb_005408_070 Hb_000567_180 Hb_000567_180 Hb_005813_010--Hb_000567_180 Hb_001898_140 Hb_001898_140 Hb_002097_140--Hb_001898_140 Hb_001922_030 Hb_001922_030 Hb_002097_140--Hb_001922_030 Hb_000811_080 Hb_000811_080 Hb_002097_140--Hb_000811_080 Hb_031089_020 Hb_031089_020 Hb_002097_140--Hb_031089_020 Hb_080477_080 Hb_080477_080 Hb_002097_140--Hb_080477_080 Hb_005784_060 Hb_005784_060 Hb_007138_030--Hb_005784_060 Hb_009545_030 Hb_009545_030 Hb_007138_030--Hb_009545_030 Hb_007138_030--Hb_080477_080 Hb_000749_160 Hb_000749_160 Hb_007138_030--Hb_000749_160 Hb_158092_040 Hb_158092_040 Hb_007138_030--Hb_158092_040 Hb_179960_010 Hb_179960_010 Hb_007138_030--Hb_179960_010 Hb_032225_030 Hb_032225_030 Hb_000110_380--Hb_032225_030 Hb_028001_020 Hb_028001_020 Hb_000110_380--Hb_028001_020 Hb_002539_040 Hb_002539_040 Hb_000110_380--Hb_002539_040 Hb_001170_010 Hb_001170_010 Hb_000110_380--Hb_001170_010 Hb_000110_380--Hb_005408_070 Hb_122940_010--Hb_001898_140 Hb_122940_010--Hb_031089_020 Hb_000975_200 Hb_000975_200 Hb_122940_010--Hb_000975_200 Hb_003387_050 Hb_003387_050 Hb_122940_010--Hb_003387_050 Hb_122940_010--Hb_002097_140 Hb_005408_070--Hb_002539_040 Hb_005408_070--Hb_000567_180 Hb_000175_470 Hb_000175_470 Hb_005408_070--Hb_000175_470 Hb_001054_090 Hb_001054_090 Hb_005408_070--Hb_001054_090 Hb_000645_200 Hb_000645_200 Hb_005408_070--Hb_000645_200 Hb_001922_060 Hb_001922_060 Hb_000567_180--Hb_001922_060 Hb_000567_180--Hb_002539_040 Hb_000567_180--Hb_000175_470 Hb_000216_050 Hb_000216_050 Hb_000567_180--Hb_000216_050 Hb_026549_050 Hb_026549_050 Hb_000567_180--Hb_026549_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.267993 1.95356 1.22258 9.70096 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.490866 1.46708 0.498262 4.26699 1.26599

CAGE analysis