Hb_000975_200

Information

Type -
Description -
Location Contig975: 147093-152678
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24360g
description POPTRDRAFT_847025; hypothetical protein
nr
ID XP_012065000.1
description PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GER2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24360g PE=4 SV=2
Gene Ontology
ID GO:0005634
description PREDICTED: uncharacterized protein LOC105628231 isoform X2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64005: 147753-148156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_200 0.0 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
2 Hb_005784_060 0.1212842716 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
3 Hb_001898_140 0.1367935356 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
4 Hb_061222_010 0.1755873573 - - hypothetical protein RCOM_0012650 [Ricinus communis]
5 Hb_000003_110 0.1757062437 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
6 Hb_000069_150 0.1759705328 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
7 Hb_010883_180 0.1791258111 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
8 Hb_122940_010 0.1802655205 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
9 Hb_003387_050 0.1865885389 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
10 Hb_000450_170 0.1868184481 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005000_280 0.1902293045 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
12 Hb_011861_090 0.1903752379 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
13 Hb_031089_020 0.1914459149 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
14 Hb_002900_180 0.1938653857 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
15 Hb_007138_030 0.1953644577 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
16 Hb_002203_020 0.1996449086 - - conserved hypothetical protein [Ricinus communis]
17 Hb_080477_080 0.203017081 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
18 Hb_003504_010 0.2035343965 - - hypothetical protein POPTR_0013s04290g [Populus trichocarpa]
19 Hb_179960_010 0.2048774024 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
20 Hb_005813_010 0.2054471935 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000975_200 Hb_000975_200 Hb_005784_060 Hb_005784_060 Hb_000975_200--Hb_005784_060 Hb_001898_140 Hb_001898_140 Hb_000975_200--Hb_001898_140 Hb_061222_010 Hb_061222_010 Hb_000975_200--Hb_061222_010 Hb_000003_110 Hb_000003_110 Hb_000975_200--Hb_000003_110 Hb_000069_150 Hb_000069_150 Hb_000975_200--Hb_000069_150 Hb_010883_180 Hb_010883_180 Hb_000975_200--Hb_010883_180 Hb_007138_030 Hb_007138_030 Hb_005784_060--Hb_007138_030 Hb_005784_060--Hb_000003_110 Hb_000997_240 Hb_000997_240 Hb_005784_060--Hb_000997_240 Hb_179960_010 Hb_179960_010 Hb_005784_060--Hb_179960_010 Hb_005000_280 Hb_005000_280 Hb_005784_060--Hb_005000_280 Hb_002097_140 Hb_002097_140 Hb_001898_140--Hb_002097_140 Hb_031089_020 Hb_031089_020 Hb_001898_140--Hb_031089_020 Hb_080477_080 Hb_080477_080 Hb_001898_140--Hb_080477_080 Hb_001898_140--Hb_005784_060 Hb_122940_010 Hb_122940_010 Hb_001898_140--Hb_122940_010 Hb_061222_010--Hb_000003_110 Hb_000025_160 Hb_000025_160 Hb_061222_010--Hb_000025_160 Hb_061222_010--Hb_031089_020 Hb_158092_040 Hb_158092_040 Hb_061222_010--Hb_158092_040 Hb_061222_010--Hb_005784_060 Hb_061222_010--Hb_000997_240 Hb_002900_180 Hb_002900_180 Hb_000003_110--Hb_002900_180 Hb_005253_020 Hb_005253_020 Hb_000003_110--Hb_005253_020 Hb_002292_080 Hb_002292_080 Hb_000003_110--Hb_002292_080 Hb_001616_100 Hb_001616_100 Hb_000003_110--Hb_001616_100 Hb_002869_090 Hb_002869_090 Hb_000069_150--Hb_002869_090 Hb_000659_050 Hb_000659_050 Hb_000069_150--Hb_000659_050 Hb_000327_100 Hb_000327_100 Hb_000069_150--Hb_000327_100 Hb_001675_020 Hb_001675_020 Hb_000069_150--Hb_001675_020 Hb_000561_040 Hb_000561_040 Hb_000069_150--Hb_000561_040 Hb_002616_020 Hb_002616_020 Hb_000069_150--Hb_002616_020 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_000260_110 Hb_000260_110 Hb_010883_180--Hb_000260_110 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_000086_090 Hb_000086_090 Hb_010883_180--Hb_000086_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.11267 2.19516 13.3164 0.0280151 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137481 0.594544 1.56231 2.75786 2.16692

CAGE analysis