Hb_002316_080

Information

Type -
Description -
Location Contig2316: 53430-54509
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07960g
description POPTRDRAFT_422315; hypothetical protein
nr
ID XP_011044332.1
description PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
swissprot
ID Q9FL07
description RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1
trembl
ID B9I378
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07960g PE=4 SV=2
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl46-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24368: 53594-53896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_080 0.0 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
2 Hb_010883_180 0.1103164308 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
3 Hb_000246_130 0.1330201765 - - tubulin alpha chain, putative [Ricinus communis]
4 Hb_000098_170 0.1347609808 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
5 Hb_007483_060 0.1440898627 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
6 Hb_019516_060 0.1507424228 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
7 Hb_000086_090 0.1517853676 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
8 Hb_000496_110 0.1543452121 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
9 Hb_004007_070 0.1547619079 - - adenylsulfate kinase, putative [Ricinus communis]
10 Hb_000069_560 0.1679136608 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
11 Hb_003207_150 0.1688523209 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
12 Hb_030565_100 0.170023302 - - serine hydroxymethyltransferase, putative [Ricinus communis]
13 Hb_002498_030 0.1710961573 - - conserved hypothetical protein [Ricinus communis]
14 Hb_053709_040 0.1717125898 - - putative actin-97 protein [Linum usitatissimum]
15 Hb_012395_110 0.172147033 - - PREDICTED: peroxygenase [Jatropha curcas]
16 Hb_007925_010 0.1734545715 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
17 Hb_000260_110 0.1739826985 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
18 Hb_034726_010 0.1745970861 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_001102_160 0.175705399 - - PREDICTED: galacturonokinase [Jatropha curcas]
20 Hb_103942_030 0.1773858389 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002316_080 Hb_002316_080 Hb_010883_180 Hb_010883_180 Hb_002316_080--Hb_010883_180 Hb_000246_130 Hb_000246_130 Hb_002316_080--Hb_000246_130 Hb_000098_170 Hb_000098_170 Hb_002316_080--Hb_000098_170 Hb_007483_060 Hb_007483_060 Hb_002316_080--Hb_007483_060 Hb_019516_060 Hb_019516_060 Hb_002316_080--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_002316_080--Hb_000086_090 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_000260_110 Hb_000260_110 Hb_010883_180--Hb_000260_110 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_010883_180--Hb_000086_090 Hb_000246_130--Hb_019516_060 Hb_000030_130 Hb_000030_130 Hb_000246_130--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_000246_130--Hb_030565_100 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010 Hb_004007_070 Hb_004007_070 Hb_000098_170--Hb_004007_070 Hb_000098_170--Hb_000086_090 Hb_000049_270 Hb_000049_270 Hb_000098_170--Hb_000049_270 Hb_006570_090 Hb_006570_090 Hb_000098_170--Hb_006570_090 Hb_006889_030 Hb_006889_030 Hb_000098_170--Hb_006889_030 Hb_012395_110 Hb_012395_110 Hb_000098_170--Hb_012395_110 Hb_000177_110 Hb_000177_110 Hb_007483_060--Hb_000177_110 Hb_007483_060--Hb_000098_170 Hb_118939_010 Hb_118939_010 Hb_007483_060--Hb_118939_010 Hb_003207_150 Hb_003207_150 Hb_007483_060--Hb_003207_150 Hb_053709_040 Hb_053709_040 Hb_007483_060--Hb_053709_040 Hb_019516_060--Hb_000030_130 Hb_000820_110 Hb_000820_110 Hb_019516_060--Hb_000820_110 Hb_003462_040 Hb_003462_040 Hb_019516_060--Hb_003462_040 Hb_019516_060--Hb_012395_110 Hb_006750_010 Hb_006750_010 Hb_019516_060--Hb_006750_010 Hb_000086_090--Hb_004007_070 Hb_000086_090--Hb_012395_110 Hb_000086_090--Hb_001102_160 Hb_000349_200 Hb_000349_200 Hb_000086_090--Hb_000349_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221613 0.268514 1.05188 3.47052 0.099701 0.0434677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0460845 0.362478 0.335202 0.174614 1.04361

CAGE analysis