Hb_001102_160

Information

Type -
Description -
Location Contig1102: 150235-172360
Sequence    

Annotation

kegg
ID rcu:RCOM_1563630
description galactokinase, putative (EC:2.7.1.6)
nr
ID XP_012079700.1
description PREDICTED: galacturonokinase [Jatropha curcas]
swissprot
ID Q8VYG2
description Galacturonokinase OS=Arabidopsis thaliana GN=GALAK PE=1 SV=1
trembl
ID A0A067LBI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17438 PE=3 SV=1
Gene Ontology
ID GO:0005737
description galacturonic acid kinase isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03154: 154036-171195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_160 0.0 - - PREDICTED: galacturonokinase [Jatropha curcas]
2 Hb_084147_010 0.1027751874 - - amino acid transporter, putative [Ricinus communis]
3 Hb_012395_110 0.1083918157 - - PREDICTED: peroxygenase [Jatropha curcas]
4 Hb_004007_070 0.1210789987 - - adenylsulfate kinase, putative [Ricinus communis]
5 Hb_019516_060 0.1217469924 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
6 Hb_000086_090 0.1247859468 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
7 Hb_000246_130 0.1274140677 - - tubulin alpha chain, putative [Ricinus communis]
8 Hb_000069_560 0.1274346141 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
9 Hb_000260_110 0.1336222476 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
10 Hb_031089_020 0.1369325644 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
11 Hb_002498_030 0.1403187087 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010883_180 0.1419535165 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
13 Hb_000297_140 0.1428890706 - - hypothetical protein RCOM_0293450 [Ricinus communis]
14 Hb_034726_010 0.1434350251 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_000023_110 0.1456557156 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
16 Hb_004241_110 0.1469156122 - - Minor allergen Alt a, putative [Ricinus communis]
17 Hb_000030_130 0.1515492896 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_000820_110 0.1541132131 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
19 Hb_000049_270 0.1547881754 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
20 Hb_000684_220 0.1558633622 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001102_160 Hb_001102_160 Hb_084147_010 Hb_084147_010 Hb_001102_160--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_001102_160--Hb_012395_110 Hb_004007_070 Hb_004007_070 Hb_001102_160--Hb_004007_070 Hb_019516_060 Hb_019516_060 Hb_001102_160--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_001102_160--Hb_000086_090 Hb_000246_130 Hb_000246_130 Hb_001102_160--Hb_000246_130 Hb_004241_110 Hb_004241_110 Hb_084147_010--Hb_004241_110 Hb_031089_020 Hb_031089_020 Hb_084147_010--Hb_031089_020 Hb_084147_010--Hb_012395_110 Hb_003470_110 Hb_003470_110 Hb_084147_010--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_084147_010--Hb_030565_100 Hb_012395_110--Hb_004007_070 Hb_012395_110--Hb_000086_090 Hb_012395_110--Hb_004241_110 Hb_012395_110--Hb_019516_060 Hb_000098_170 Hb_000098_170 Hb_004007_070--Hb_000098_170 Hb_004007_070--Hb_000086_090 Hb_000049_270 Hb_000049_270 Hb_004007_070--Hb_000049_270 Hb_000365_280 Hb_000365_280 Hb_004007_070--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_004007_070--Hb_002893_030 Hb_019516_060--Hb_000246_130 Hb_000030_130 Hb_000030_130 Hb_019516_060--Hb_000030_130 Hb_000820_110 Hb_000820_110 Hb_019516_060--Hb_000820_110 Hb_003462_040 Hb_003462_040 Hb_019516_060--Hb_003462_040 Hb_006750_010 Hb_006750_010 Hb_019516_060--Hb_006750_010 Hb_000086_090--Hb_000098_170 Hb_010883_180 Hb_010883_180 Hb_000086_090--Hb_010883_180 Hb_000349_200 Hb_000349_200 Hb_000086_090--Hb_000349_200 Hb_000246_130--Hb_000030_130 Hb_000246_130--Hb_030565_100 Hb_002316_080 Hb_002316_080 Hb_000246_130--Hb_002316_080 Hb_000246_130--Hb_084147_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.447963 2.04689 4.86019 15.0077 0.127293 0.313557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5442 0.575498 0.643578 0.942898 4.97363

CAGE analysis