Hb_010883_180

Information

Type transcription factor
Description TF Family: CSD
Location Contig10883: 142521-145379
Sequence    

Annotation

kegg
ID rcu:RCOM_1031420
description cold shock protein, putative
nr
ID XP_012078181.1
description PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
swissprot
ID P27484
description Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1
trembl
ID A0A067K979
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12058 PE=4 SV=1
Gene Ontology
ID GO:0003677
description glycine-rich protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_180 0.0 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
2 Hb_002316_080 0.1103164308 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
3 Hb_030565_100 0.119831 - - serine hydroxymethyltransferase, putative [Ricinus communis]
4 Hb_000260_110 0.1225961996 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_103942_030 0.1318055871 - - protein with unknown function [Ricinus communis]
6 Hb_000054_010 0.1330153631 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_000086_090 0.1337205724 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
8 Hb_000098_170 0.1361971142 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
9 Hb_004007_070 0.1381670202 - - adenylsulfate kinase, putative [Ricinus communis]
10 Hb_012395_110 0.1415784265 - - PREDICTED: peroxygenase [Jatropha curcas]
11 Hb_001102_160 0.1419535165 - - PREDICTED: galacturonokinase [Jatropha curcas]
12 Hb_000297_140 0.1453586906 - - hypothetical protein RCOM_0293450 [Ricinus communis]
13 Hb_002900_180 0.1458368532 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
14 Hb_000246_130 0.1469942447 - - tubulin alpha chain, putative [Ricinus communis]
15 Hb_029223_040 0.1516746628 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
16 Hb_000025_160 0.1519188825 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
17 Hb_002233_160 0.1561743756 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
18 Hb_006889_030 0.1563197767 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
19 Hb_031089_020 0.1565464755 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
20 Hb_034726_010 0.1574629528 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_010883_180 Hb_010883_180 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_000260_110 Hb_000260_110 Hb_010883_180--Hb_000260_110 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_000086_090 Hb_000086_090 Hb_010883_180--Hb_000086_090 Hb_000246_130 Hb_000246_130 Hb_002316_080--Hb_000246_130 Hb_000098_170 Hb_000098_170 Hb_002316_080--Hb_000098_170 Hb_007483_060 Hb_007483_060 Hb_002316_080--Hb_007483_060 Hb_019516_060 Hb_019516_060 Hb_002316_080--Hb_019516_060 Hb_002316_080--Hb_000086_090 Hb_000077_100 Hb_000077_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_000236_180 Hb_000236_180 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_003470_110 Hb_003470_110 Hb_030565_100--Hb_003470_110 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000011_280 Hb_000011_280 Hb_000260_110--Hb_000011_280 Hb_002900_180 Hb_002900_180 Hb_000260_110--Hb_002900_180 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000462_070 Hb_000462_070 Hb_000260_110--Hb_000462_070 Hb_002893_030 Hb_002893_030 Hb_103942_030--Hb_002893_030 Hb_103942_030--Hb_000260_110 Hb_000389_040 Hb_000389_040 Hb_103942_030--Hb_000389_040 Hb_004007_070 Hb_004007_070 Hb_103942_030--Hb_004007_070 Hb_103942_030--Hb_000086_090 Hb_000054_010--Hb_030565_100 Hb_001186_110 Hb_001186_110 Hb_000054_010--Hb_001186_110 Hb_007311_050 Hb_007311_050 Hb_000054_010--Hb_007311_050 Hb_000054_010--Hb_174541_030 Hb_007574_040 Hb_007574_040 Hb_000054_010--Hb_007574_040 Hb_000086_090--Hb_000098_170 Hb_000086_090--Hb_004007_070 Hb_012395_110 Hb_012395_110 Hb_000086_090--Hb_012395_110 Hb_001102_160 Hb_001102_160 Hb_000086_090--Hb_001102_160 Hb_000349_200 Hb_000349_200 Hb_000086_090--Hb_000349_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65487 6.46114 18.038 77.2274 0.802799 1.08481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7739 4.2879 7.06782 6.82474 18.9952

CAGE analysis