Hb_007483_060

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig7483: 35585-42038
Sequence    

Annotation

kegg
ID rcu:RCOM_0634830
description multidrug resistance protein 1, 2, putative (EC:3.6.3.36 3.6.3.44)
nr
ID XP_002519757.1
description multidrug resistance protein 1, 2, putative [Ricinus communis]
swissprot
ID Q9M0M2
description ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=3 SV=2
trembl
ID B9S188
description Multidrug resistance protein 1, 2, putative OS=Ricinus communis GN=RCOM_0634830 PE=3 SV=1
Gene Ontology
ID GO:0016021
description p-glycoprotein 9 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56758: 37051-37471 , PASA_asmbl_56759: 38343-38808 , PASA_asmbl_56760: 41141-41578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007483_060 0.0 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
2 Hb_000177_110 0.1355182531 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
3 Hb_002316_080 0.1440898627 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
4 Hb_000098_170 0.1442479576 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
5 Hb_118939_010 0.1470423399 - - protein binding protein, putative [Ricinus communis]
6 Hb_003207_150 0.1484856689 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
7 Hb_053709_040 0.1501017358 - - putative actin-97 protein [Linum usitatissimum]
8 Hb_000805_140 0.1629167149 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
9 Hb_000424_030 0.1677606866 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003680_030 0.1708185042 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
11 Hb_004007_070 0.1817907174 - - adenylsulfate kinase, putative [Ricinus communis]
12 Hb_000330_020 0.1822781132 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
13 Hb_066778_010 0.1839235066 - - -
14 Hb_002217_320 0.1870745549 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
15 Hb_000086_090 0.1875161255 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
16 Hb_054865_160 0.1878123221 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
17 Hb_000246_130 0.1894307119 - - tubulin alpha chain, putative [Ricinus communis]
18 Hb_001366_170 0.1904608712 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
19 Hb_012762_060 0.195393964 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
20 Hb_000049_270 0.1959373486 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007483_060 Hb_007483_060 Hb_000177_110 Hb_000177_110 Hb_007483_060--Hb_000177_110 Hb_002316_080 Hb_002316_080 Hb_007483_060--Hb_002316_080 Hb_000098_170 Hb_000098_170 Hb_007483_060--Hb_000098_170 Hb_118939_010 Hb_118939_010 Hb_007483_060--Hb_118939_010 Hb_003207_150 Hb_003207_150 Hb_007483_060--Hb_003207_150 Hb_053709_040 Hb_053709_040 Hb_007483_060--Hb_053709_040 Hb_000177_110--Hb_003207_150 Hb_034726_010 Hb_034726_010 Hb_000177_110--Hb_034726_010 Hb_000424_030 Hb_000424_030 Hb_000177_110--Hb_000424_030 Hb_002217_500 Hb_002217_500 Hb_000177_110--Hb_002217_500 Hb_000671_130 Hb_000671_130 Hb_000177_110--Hb_000671_130 Hb_010883_180 Hb_010883_180 Hb_002316_080--Hb_010883_180 Hb_000246_130 Hb_000246_130 Hb_002316_080--Hb_000246_130 Hb_002316_080--Hb_000098_170 Hb_019516_060 Hb_019516_060 Hb_002316_080--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_002316_080--Hb_000086_090 Hb_004007_070 Hb_004007_070 Hb_000098_170--Hb_004007_070 Hb_000098_170--Hb_000086_090 Hb_000049_270 Hb_000049_270 Hb_000098_170--Hb_000049_270 Hb_006570_090 Hb_006570_090 Hb_000098_170--Hb_006570_090 Hb_006889_030 Hb_006889_030 Hb_000098_170--Hb_006889_030 Hb_012395_110 Hb_012395_110 Hb_000098_170--Hb_012395_110 Hb_012286_060 Hb_012286_060 Hb_118939_010--Hb_012286_060 Hb_005348_150 Hb_005348_150 Hb_118939_010--Hb_005348_150 Hb_007044_090 Hb_007044_090 Hb_118939_010--Hb_007044_090 Hb_001579_300 Hb_001579_300 Hb_118939_010--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_118939_010--Hb_006925_050 Hb_003207_150--Hb_053709_040 Hb_003207_150--Hb_034726_010 Hb_001366_170 Hb_001366_170 Hb_003207_150--Hb_001366_170 Hb_003207_150--Hb_000671_130 Hb_122636_010 Hb_122636_010 Hb_003207_150--Hb_122636_010 Hb_053709_040--Hb_001366_170 Hb_053709_040--Hb_034726_010 Hb_008185_020 Hb_008185_020 Hb_053709_040--Hb_008185_020 Hb_007632_100 Hb_007632_100 Hb_053709_040--Hb_007632_100 Hb_053709_040--Hb_000177_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0577917 0.152038 0.308354 0.966634 0.107592 0.0595078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0109617 0.138024 0.082828 0.034169 0.240283

CAGE analysis