Hb_006570_090

Information

Type -
Description -
Location Contig6570: 53937-57517
Sequence    

Annotation

kegg
ID rcu:RCOM_1598040
description tubulin beta chain, putative
nr
ID XP_002510540.1
description tubulin beta chain, putative [Ricinus communis]
swissprot
ID Q43697
description Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1
trembl
ID B9R897
description Tubulin beta chain, putative OS=Ricinus communis GN=RCOM_1598040 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52789: 53801-57482
cDNA
(Sanger)
(ID:Location)		 025_O24.ab1: 53890-56472 , 048_G16.ab1: 53801-56278

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_090 0.0 - - tubulin beta chain, putative [Ricinus communis]
2 Hb_000049_270 0.0675284424 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
3 Hb_012807_150 0.1174940599 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
4 Hb_004007_070 0.1212774721 - - adenylsulfate kinase, putative [Ricinus communis]
5 Hb_134014_010 0.1252258439 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
6 Hb_000603_020 0.128573754 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
7 Hb_000023_110 0.1285969285 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
8 Hb_000098_170 0.1289820786 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
9 Hb_000692_100 0.1296798634 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_189003_070 0.1313496052 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
11 Hb_003929_230 0.1364231674 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
12 Hb_006615_230 0.1364253885 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
13 Hb_000271_220 0.1364256556 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
14 Hb_003086_030 0.1374180011 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
15 Hb_000963_050 0.1405560473 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
16 Hb_064546_010 0.1412441692 - - PREDICTED: peroxidase 3 [Jatropha curcas]
17 Hb_003606_050 0.1420553413 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
18 Hb_001318_100 0.1444321659 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
19 Hb_012395_110 0.1467794652 - - PREDICTED: peroxygenase [Jatropha curcas]
20 Hb_001450_040 0.1471728643 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]

Gene co-expression network

sample Hb_006570_090 Hb_006570_090 Hb_000049_270 Hb_000049_270 Hb_006570_090--Hb_000049_270 Hb_012807_150 Hb_012807_150 Hb_006570_090--Hb_012807_150 Hb_004007_070 Hb_004007_070 Hb_006570_090--Hb_004007_070 Hb_134014_010 Hb_134014_010 Hb_006570_090--Hb_134014_010 Hb_000603_020 Hb_000603_020 Hb_006570_090--Hb_000603_020 Hb_000023_110 Hb_000023_110 Hb_006570_090--Hb_000023_110 Hb_000049_270--Hb_004007_070 Hb_000049_270--Hb_000023_110 Hb_000098_170 Hb_000098_170 Hb_000049_270--Hb_000098_170 Hb_000049_270--Hb_012807_150 Hb_006889_030 Hb_006889_030 Hb_000049_270--Hb_006889_030 Hb_000283_140 Hb_000283_140 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_012807_150--Hb_000603_020 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060 Hb_012395_110 Hb_012395_110 Hb_004007_070--Hb_012395_110 Hb_004007_070--Hb_000098_170 Hb_000086_090 Hb_000086_090 Hb_004007_070--Hb_000086_090 Hb_000365_280 Hb_000365_280 Hb_004007_070--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_004007_070--Hb_002893_030 Hb_006615_230 Hb_006615_230 Hb_134014_010--Hb_006615_230 Hb_189003_070 Hb_189003_070 Hb_134014_010--Hb_189003_070 Hb_000959_130 Hb_000959_130 Hb_134014_010--Hb_000959_130 Hb_012395_050 Hb_012395_050 Hb_134014_010--Hb_012395_050 Hb_029223_040 Hb_029223_040 Hb_134014_010--Hb_029223_040 Hb_158092_040 Hb_158092_040 Hb_134014_010--Hb_158092_040 Hb_000603_020--Hb_000271_220 Hb_003001_130 Hb_003001_130 Hb_000603_020--Hb_003001_130 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030 Hb_003408_010 Hb_003408_010 Hb_000023_110--Hb_003408_010 Hb_000023_110--Hb_000327_360 Hb_000023_110--Hb_012807_150 Hb_003606_050 Hb_003606_050 Hb_000023_110--Hb_003606_050 Hb_031284_030 Hb_031284_030 Hb_000023_110--Hb_031284_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.40406 23.1661 47.6329 111.684 5.57647 3.57124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89762 1.15288 6.51265 16.2578 44.7384

CAGE analysis