Hb_003408_010

Information

Type -
Description -
Location Contig3408: 37404-40741
Sequence    

Annotation

kegg
ID rcu:RCOM_0452930
description fructokinase, putative (EC:2.7.1.4)
nr
ID AJK93568.1
description fructokinase [Manihot esculenta]
swissprot
ID Q42896
description Fructokinase-2 OS=Solanum lycopersicum GN=FRK2 PE=2 SV=2
trembl
ID A0A0C5AU57
description FRK4 protein OS=Manihot esculenta GN=FRK4 PE=2 SV=1
Gene Ontology
ID GO:0004747
description probable fructokinase-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35628: 37422-40757
cDNA
(Sanger)
(ID:Location)		 039_B23.ab1: 40398-40736

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003408_010 0.0 - - fructokinase [Manihot esculenta]
2 Hb_000932_050 0.0940787448 - - annexin [Manihot esculenta]
3 Hb_001450_040 0.1182374696 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
4 Hb_001401_040 0.1191319236 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
5 Hb_000023_110 0.1194733369 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
6 Hb_000108_240 0.1297976685 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
7 Hb_008725_080 0.1393273318 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
8 Hb_001369_630 0.1420503622 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
9 Hb_000935_040 0.1452991615 - - Uncharacterized protein isoform 2 [Theobroma cacao]
10 Hb_017439_010 0.1460344493 - - putative actin-97 protein [Linum usitatissimum]
11 Hb_000527_080 0.1474402396 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
12 Hb_000086_210 0.14954751 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_003894_030 0.150511758 - - plant sec1, putative [Ricinus communis]
14 Hb_000328_010 0.1530822896 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
15 Hb_002498_030 0.1530915733 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000856_400 0.155123654 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
17 Hb_000689_050 0.1570222991 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000193_340 0.1572388109 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
19 Hb_001377_530 0.1583178222 - - NC domain-containing family protein [Populus trichocarpa]
20 Hb_002028_110 0.1583828437 - - PREDICTED: F-box only protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_003408_010 Hb_003408_010 Hb_000932_050 Hb_000932_050 Hb_003408_010--Hb_000932_050 Hb_001450_040 Hb_001450_040 Hb_003408_010--Hb_001450_040 Hb_001401_040 Hb_001401_040 Hb_003408_010--Hb_001401_040 Hb_000023_110 Hb_000023_110 Hb_003408_010--Hb_000023_110 Hb_000108_240 Hb_000108_240 Hb_003408_010--Hb_000108_240 Hb_008725_080 Hb_008725_080 Hb_003408_010--Hb_008725_080 Hb_000932_050--Hb_001450_040 Hb_000856_400 Hb_000856_400 Hb_000932_050--Hb_000856_400 Hb_000932_050--Hb_000023_110 Hb_010889_010 Hb_010889_010 Hb_000932_050--Hb_010889_010 Hb_064546_010 Hb_064546_010 Hb_000932_050--Hb_064546_010 Hb_000527_080 Hb_000527_080 Hb_001450_040--Hb_000527_080 Hb_031284_030 Hb_031284_030 Hb_001450_040--Hb_031284_030 Hb_001450_040--Hb_000023_110 Hb_012807_150 Hb_012807_150 Hb_001450_040--Hb_012807_150 Hb_003055_090 Hb_003055_090 Hb_001401_040--Hb_003055_090 Hb_001408_170 Hb_001408_170 Hb_001401_040--Hb_001408_170 Hb_004650_030 Hb_004650_030 Hb_001401_040--Hb_004650_030 Hb_017439_010 Hb_017439_010 Hb_001401_040--Hb_017439_010 Hb_001268_160 Hb_001268_160 Hb_001401_040--Hb_001268_160 Hb_000049_270 Hb_000049_270 Hb_000023_110--Hb_000049_270 Hb_000327_360 Hb_000327_360 Hb_000023_110--Hb_000327_360 Hb_000023_110--Hb_012807_150 Hb_003606_050 Hb_003606_050 Hb_000023_110--Hb_003606_050 Hb_000023_110--Hb_031284_030 Hb_048476_140 Hb_048476_140 Hb_000108_240--Hb_048476_140 Hb_004041_050 Hb_004041_050 Hb_000108_240--Hb_004041_050 Hb_005622_020 Hb_005622_020 Hb_000108_240--Hb_005622_020 Hb_001180_010 Hb_001180_010 Hb_000108_240--Hb_001180_010 Hb_000108_240--Hb_004650_030 Hb_000328_010 Hb_000328_010 Hb_008725_080--Hb_000328_010 Hb_105959_010 Hb_105959_010 Hb_008725_080--Hb_105959_010 Hb_005144_120 Hb_005144_120 Hb_008725_080--Hb_005144_120 Hb_006153_160 Hb_006153_160 Hb_008725_080--Hb_006153_160 Hb_008725_080--Hb_000108_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2887 15.2166 157.398 228.094 5.25124 7.93214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.466 13.4626 32.9751 38.5043 85.0543

CAGE analysis