Hb_000108_240

Information

Type -
Description -
Location Contig108: 185649-186621
Sequence    

Annotation

kegg
ID mdm:103422551
description protochlorophyllide-dependent translocon component 52, chloroplastic-like
nr
ID KGN66375.1
description hypothetical protein Csa_1G600150 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0LWW6
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600150 PE=4 SV=1
Gene Ontology
ID GO:0009941
description protochlorophyllide-dependent translocon component chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_240 0.0 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
2 Hb_048476_140 0.123403872 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
3 Hb_003408_010 0.1297976685 - - fructokinase [Manihot esculenta]
4 Hb_004041_050 0.1318838112 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_005622_020 0.1339166989 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
6 Hb_001180_010 0.1372011099 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
7 Hb_004650_030 0.1416312514 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
8 Hb_000193_340 0.1483343846 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
9 Hb_001377_530 0.1491434868 - - NC domain-containing family protein [Populus trichocarpa]
10 Hb_005470_030 0.1494944726 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
11 Hb_001401_040 0.1535444059 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
12 Hb_000649_040 0.1573880571 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
13 Hb_000689_050 0.1580535329 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002284_220 0.1585705529 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
15 Hb_000331_350 0.1600280778 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
16 Hb_002028_110 0.160067064 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
17 Hb_000086_210 0.1621680022 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000328_010 0.1635090639 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
19 Hb_000076_030 0.1638319019 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
20 Hb_002701_070 0.1656759905 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]

Gene co-expression network

sample Hb_000108_240 Hb_000108_240 Hb_048476_140 Hb_048476_140 Hb_000108_240--Hb_048476_140 Hb_003408_010 Hb_003408_010 Hb_000108_240--Hb_003408_010 Hb_004041_050 Hb_004041_050 Hb_000108_240--Hb_004041_050 Hb_005622_020 Hb_005622_020 Hb_000108_240--Hb_005622_020 Hb_001180_010 Hb_001180_010 Hb_000108_240--Hb_001180_010 Hb_004650_030 Hb_004650_030 Hb_000108_240--Hb_004650_030 Hb_000076_030 Hb_000076_030 Hb_048476_140--Hb_000076_030 Hb_048476_140--Hb_001180_010 Hb_048476_140--Hb_004041_050 Hb_022693_110 Hb_022693_110 Hb_048476_140--Hb_022693_110 Hb_042083_030 Hb_042083_030 Hb_048476_140--Hb_042083_030 Hb_161396_010 Hb_161396_010 Hb_048476_140--Hb_161396_010 Hb_000932_050 Hb_000932_050 Hb_003408_010--Hb_000932_050 Hb_001450_040 Hb_001450_040 Hb_003408_010--Hb_001450_040 Hb_001401_040 Hb_001401_040 Hb_003408_010--Hb_001401_040 Hb_000023_110 Hb_000023_110 Hb_003408_010--Hb_000023_110 Hb_008725_080 Hb_008725_080 Hb_003408_010--Hb_008725_080 Hb_004041_050--Hb_001180_010 Hb_004041_050--Hb_000076_030 Hb_004041_050--Hb_042083_030 Hb_121089_050 Hb_121089_050 Hb_004041_050--Hb_121089_050 Hb_002759_220 Hb_002759_220 Hb_004041_050--Hb_002759_220 Hb_005622_020--Hb_004041_050 Hb_006634_100 Hb_006634_100 Hb_005622_020--Hb_006634_100 Hb_003050_360 Hb_003050_360 Hb_005622_020--Hb_003050_360 Hb_002028_110 Hb_002028_110 Hb_005622_020--Hb_002028_110 Hb_000193_340 Hb_000193_340 Hb_005622_020--Hb_000193_340 Hb_001544_050 Hb_001544_050 Hb_001180_010--Hb_001544_050 Hb_001180_010--Hb_000076_030 Hb_004994_330 Hb_004994_330 Hb_001180_010--Hb_004994_330 Hb_000465_410 Hb_000465_410 Hb_001180_010--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001180_010--Hb_002701_070 Hb_004650_030--Hb_001401_040 Hb_000260_040 Hb_000260_040 Hb_004650_030--Hb_000260_040 Hb_004531_080 Hb_004531_080 Hb_004650_030--Hb_004531_080 Hb_001377_530 Hb_001377_530 Hb_004650_030--Hb_001377_530 Hb_010172_110 Hb_010172_110 Hb_004650_030--Hb_010172_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33107 1.73653 35.6155 34.2151 0.219509 1.5661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.07043 3.29593 9.42203 9.53507 24.6791

CAGE analysis