Hb_001401_040

Information

Type -
Description -
Location Contig1401: 33955-36861
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02950g
description hypothetical protein
nr
ID XP_012080736.1
description PREDICTED: protein CYPRO4 [Jatropha curcas]
swissprot
ID P40781
description Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1
trembl
ID A0A067K3T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15191 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein cypro4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10919: 33936-37008
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001401_040 0.0 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
2 Hb_003055_090 0.0995790674 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
3 Hb_001408_170 0.1189009926 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
4 Hb_003408_010 0.1191319236 - - fructokinase [Manihot esculenta]
5 Hb_004650_030 0.1196193574 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
6 Hb_017439_010 0.1201445156 - - putative actin-97 protein [Linum usitatissimum]
7 Hb_001268_160 0.1302099601 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
8 Hb_001377_530 0.1388408038 - - NC domain-containing family protein [Populus trichocarpa]
9 Hb_004531_080 0.1393809222 - - hypothetical protein RCOM_1491960 [Ricinus communis]
10 Hb_000061_400 0.1462221629 - - dimethylaniline monooxygenase, putative [Ricinus communis]
11 Hb_010889_010 0.1464079297 - - PREDICTED: myosin-12 [Jatropha curcas]
12 Hb_000260_040 0.1479005768 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
13 Hb_000190_220 0.1525327959 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
14 Hb_000108_240 0.1535444059 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
15 Hb_010381_040 0.1596678856 - - beta-galactosidase, putative [Ricinus communis]
16 Hb_000230_190 0.1614430391 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
17 Hb_006970_130 0.1614857551 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
18 Hb_001123_310 0.1622312769 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
19 Hb_000023_110 0.1627218245 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
20 Hb_000932_050 0.1629777018 - - annexin [Manihot esculenta]

Gene co-expression network

sample Hb_001401_040 Hb_001401_040 Hb_003055_090 Hb_003055_090 Hb_001401_040--Hb_003055_090 Hb_001408_170 Hb_001408_170 Hb_001401_040--Hb_001408_170 Hb_003408_010 Hb_003408_010 Hb_001401_040--Hb_003408_010 Hb_004650_030 Hb_004650_030 Hb_001401_040--Hb_004650_030 Hb_017439_010 Hb_017439_010 Hb_001401_040--Hb_017439_010 Hb_001268_160 Hb_001268_160 Hb_001401_040--Hb_001268_160 Hb_003728_110 Hb_003728_110 Hb_003055_090--Hb_003728_110 Hb_003055_090--Hb_017439_010 Hb_010889_010 Hb_010889_010 Hb_003055_090--Hb_010889_010 Hb_003992_280 Hb_003992_280 Hb_003055_090--Hb_003992_280 Hb_003055_090--Hb_001268_160 Hb_004052_100 Hb_004052_100 Hb_001408_170--Hb_004052_100 Hb_001408_170--Hb_001268_160 Hb_001377_530 Hb_001377_530 Hb_001408_170--Hb_001377_530 Hb_010381_040 Hb_010381_040 Hb_001408_170--Hb_010381_040 Hb_011174_040 Hb_011174_040 Hb_001408_170--Hb_011174_040 Hb_000932_050 Hb_000932_050 Hb_003408_010--Hb_000932_050 Hb_001450_040 Hb_001450_040 Hb_003408_010--Hb_001450_040 Hb_000023_110 Hb_000023_110 Hb_003408_010--Hb_000023_110 Hb_000108_240 Hb_000108_240 Hb_003408_010--Hb_000108_240 Hb_008725_080 Hb_008725_080 Hb_003408_010--Hb_008725_080 Hb_004650_030--Hb_000108_240 Hb_000260_040 Hb_000260_040 Hb_004650_030--Hb_000260_040 Hb_004531_080 Hb_004531_080 Hb_004650_030--Hb_004531_080 Hb_004650_030--Hb_001377_530 Hb_010172_110 Hb_010172_110 Hb_004650_030--Hb_010172_110 Hb_002498_030 Hb_002498_030 Hb_017439_010--Hb_002498_030 Hb_017439_010--Hb_001268_160 Hb_017439_010--Hb_010889_010 Hb_000328_010 Hb_000328_010 Hb_017439_010--Hb_000328_010 Hb_000008_200 Hb_000008_200 Hb_001268_160--Hb_000008_200 Hb_001268_160--Hb_010381_040 Hb_008053_030 Hb_008053_030 Hb_001268_160--Hb_008053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.567983 0.709744 11.9073 11.5164 0.180691 0.29702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48711 1.17012 1.15896 2.05021 3.51641

CAGE analysis