Hb_008053_030

Information

Type -
Description -
Location Contig8053: 27418-30242
Sequence    

Annotation

kegg
ID rcu:RCOM_1615270
description Rop guanine nucleotide exchange factor, putative
nr
ID XP_002511862.1
description Rop guanine nucleotide exchange factor, putative [Ricinus communis]
swissprot
ID Q9LQ89
description Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2
trembl
ID B9RDS3
description Rop guanine nucleotide exchange factor, putative OS=Ricinus communis GN=RCOM_1615270 PE=4 SV=1
Gene Ontology
ID GO:0005089
description rop guanine nucleotide exchange factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59012: 27600-27792 , PASA_asmbl_59013: 29349-30193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008053_030 0.0 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
2 Hb_000465_410 0.1062700046 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001544_050 0.1118213882 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
4 Hb_001377_120 0.1126470152 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
5 Hb_147378_010 0.1129547294 - - -
6 Hb_006133_020 0.1165165198 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
7 Hb_001268_160 0.1257637858 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
8 Hb_000622_170 0.1284154442 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
9 Hb_002701_070 0.1302847654 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
10 Hb_010889_010 0.131802744 - - PREDICTED: myosin-12 [Jatropha curcas]
11 Hb_001269_060 0.1346664325 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
12 Hb_010381_040 0.1359159606 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_001180_010 0.1376509925 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
14 Hb_003020_190 0.1379365555 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
15 Hb_000230_190 0.1383392996 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
16 Hb_000964_050 0.1421655556 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
17 Hb_001186_100 0.1426495329 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
18 Hb_047659_010 0.146019732 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000390_210 0.1460459735 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_000749_260 0.1461396793 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008053_030 Hb_008053_030 Hb_000465_410 Hb_000465_410 Hb_008053_030--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_008053_030--Hb_001544_050 Hb_001377_120 Hb_001377_120 Hb_008053_030--Hb_001377_120 Hb_147378_010 Hb_147378_010 Hb_008053_030--Hb_147378_010 Hb_006133_020 Hb_006133_020 Hb_008053_030--Hb_006133_020 Hb_001268_160 Hb_001268_160 Hb_008053_030--Hb_001268_160 Hb_002701_070 Hb_002701_070 Hb_000465_410--Hb_002701_070 Hb_000465_410--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_000465_410--Hb_001180_010 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_004994_330 Hb_004994_330 Hb_000465_410--Hb_004994_330 Hb_000749_260 Hb_000749_260 Hb_000465_410--Hb_000749_260 Hb_001544_050--Hb_001180_010 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_001544_050--Hb_002701_070 Hb_001544_050--Hb_000749_260 Hb_001544_050--Hb_004994_330 Hb_001269_060 Hb_001269_060 Hb_001377_120--Hb_001269_060 Hb_121313_010 Hb_121313_010 Hb_001377_120--Hb_121313_010 Hb_000645_260 Hb_000645_260 Hb_001377_120--Hb_000645_260 Hb_000302_360 Hb_000302_360 Hb_001377_120--Hb_000302_360 Hb_033006_020 Hb_033006_020 Hb_001377_120--Hb_033006_020 Hb_006816_250 Hb_006816_250 Hb_001377_120--Hb_006816_250 Hb_147378_010--Hb_000390_210 Hb_147378_010--Hb_000749_260 Hb_147378_010--Hb_001544_050 Hb_004650_050 Hb_004650_050 Hb_147378_010--Hb_004650_050 Hb_147378_010--Hb_000465_410 Hb_008511_040 Hb_008511_040 Hb_006133_020--Hb_008511_040 Hb_003020_190 Hb_003020_190 Hb_006133_020--Hb_003020_190 Hb_001862_050 Hb_001862_050 Hb_006133_020--Hb_001862_050 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_001408_170 Hb_001408_170 Hb_001268_160--Hb_001408_170 Hb_000008_200 Hb_000008_200 Hb_001268_160--Hb_000008_200 Hb_010381_040 Hb_010381_040 Hb_001268_160--Hb_010381_040 Hb_001401_040 Hb_001401_040 Hb_001268_160--Hb_001401_040 Hb_017439_010 Hb_017439_010 Hb_001268_160--Hb_017439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0782579 0.364851 3.24461 2.28256 0.0104762 0.0650609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0713457 0.205831 0.212625 0.193645 1.54006

CAGE analysis