Hb_001268_160

Information

Type -
Description -
Location Contig1268: 161147-163127
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07860g
description hypothetical protein
nr
ID XP_003624449.1
description Glycerophosphodiester phosphodiesterase [Medicago truncatula]
swissprot
ID -
description -
trembl
ID B9N110
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s07860g PE=4 SV=1
Gene Ontology
ID GO:0009536
description glycerophosphodiester phosphodiesterase gde1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08105: 162355-162672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_160 0.0 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
2 Hb_001408_170 0.1079074444 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
3 Hb_000008_200 0.1105225757 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
4 Hb_010381_040 0.1212332493 - - beta-galactosidase, putative [Ricinus communis]
5 Hb_008053_030 0.1257637858 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
6 Hb_001401_040 0.1302099601 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
7 Hb_017439_010 0.134969826 - - putative actin-97 protein [Linum usitatissimum]
8 Hb_003055_090 0.1392689718 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
9 Hb_000465_410 0.140910926 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011174_040 0.1427629369 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002701_070 0.1437316597 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
12 Hb_001544_050 0.1439016649 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
13 Hb_000243_060 0.1441565336 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
14 Hb_001377_530 0.1441810447 - - NC domain-containing family protein [Populus trichocarpa]
15 Hb_001123_310 0.1461287169 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
16 Hb_008511_040 0.1484613073 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_001180_010 0.1511404327 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
18 Hb_006133_020 0.1517108734 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
19 Hb_010889_010 0.1548900527 - - PREDICTED: myosin-12 [Jatropha curcas]
20 Hb_004052_100 0.1550630557 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_160 Hb_001268_160 Hb_001408_170 Hb_001408_170 Hb_001268_160--Hb_001408_170 Hb_000008_200 Hb_000008_200 Hb_001268_160--Hb_000008_200 Hb_010381_040 Hb_010381_040 Hb_001268_160--Hb_010381_040 Hb_008053_030 Hb_008053_030 Hb_001268_160--Hb_008053_030 Hb_001401_040 Hb_001401_040 Hb_001268_160--Hb_001401_040 Hb_017439_010 Hb_017439_010 Hb_001268_160--Hb_017439_010 Hb_004052_100 Hb_004052_100 Hb_001408_170--Hb_004052_100 Hb_001408_170--Hb_001401_040 Hb_001377_530 Hb_001377_530 Hb_001408_170--Hb_001377_530 Hb_001408_170--Hb_010381_040 Hb_011174_040 Hb_011174_040 Hb_001408_170--Hb_011174_040 Hb_005568_020 Hb_005568_020 Hb_000008_200--Hb_005568_020 Hb_008511_040 Hb_008511_040 Hb_000008_200--Hb_008511_040 Hb_003606_050 Hb_003606_050 Hb_000008_200--Hb_003606_050 Hb_091318_010 Hb_091318_010 Hb_000008_200--Hb_091318_010 Hb_000735_060 Hb_000735_060 Hb_000008_200--Hb_000735_060 Hb_000207_350 Hb_000207_350 Hb_010381_040--Hb_000207_350 Hb_004855_020 Hb_004855_020 Hb_010381_040--Hb_004855_020 Hb_010868_040 Hb_010868_040 Hb_010381_040--Hb_010868_040 Hb_000243_060 Hb_000243_060 Hb_010381_040--Hb_000243_060 Hb_001123_310 Hb_001123_310 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_000465_410 Hb_000465_410 Hb_008053_030--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_008053_030--Hb_001544_050 Hb_001377_120 Hb_001377_120 Hb_008053_030--Hb_001377_120 Hb_147378_010 Hb_147378_010 Hb_008053_030--Hb_147378_010 Hb_006133_020 Hb_006133_020 Hb_008053_030--Hb_006133_020 Hb_003055_090 Hb_003055_090 Hb_001401_040--Hb_003055_090 Hb_003408_010 Hb_003408_010 Hb_001401_040--Hb_003408_010 Hb_004650_030 Hb_004650_030 Hb_001401_040--Hb_004650_030 Hb_001401_040--Hb_017439_010 Hb_002498_030 Hb_002498_030 Hb_017439_010--Hb_002498_030 Hb_017439_010--Hb_003055_090 Hb_010889_010 Hb_010889_010 Hb_017439_010--Hb_010889_010 Hb_000328_010 Hb_000328_010 Hb_017439_010--Hb_000328_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.22356 4.19981 33.3104 28.1403 0.437445 0.290888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82533 4.88743 1.23286 4.39723 13.8404

CAGE analysis