Hb_010889_010

Information

Type -
Description -
Location Contig10889: 15575-29954
Sequence    

Annotation

kegg
ID rcu:RCOM_1777580
description myosin XI, putative
nr
ID XP_012092586.1
description PREDICTED: myosin-12 [Jatropha curcas]
swissprot
ID F4IRU3
description Myosin-12 OS=Arabidopsis thaliana GN=XI-F PE=2 SV=1
trembl
ID B9REP0
description Myosin XI, putative OS=Ricinus communis GN=RCOM_1777580 PE=4 SV=1
Gene Ontology
ID GO:0016021
description myosin-12 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02683: 15503-15941 , PASA_asmbl_02684: 15989-17090 , PASA_asmbl_02685: 17207-17566 , PASA_asmbl_02686: 17585-18706 , PASA_asmbl_02687: 18842-22336 , PASA_asmbl_02690: 23009-24559 , PASA_asmbl_02691: 24654-25071 , PASA_asmbl_02692: 25592-27632 , PASA_asmbl_02694: 28075-28514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010889_010 0.0 - - PREDICTED: myosin-12 [Jatropha curcas]
2 Hb_004117_090 0.1132587403 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
3 Hb_010381_100 0.1272268376 - - Phospholipase D epsilon [Morus notabilis]
4 Hb_003055_090 0.1280019908 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
5 Hb_003813_090 0.1291917192 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
6 Hb_005496_040 0.129619948 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
7 Hb_003728_110 0.1297761707 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
8 Hb_000107_360 0.1303652209 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
9 Hb_001186_100 0.130992534 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
10 Hb_008053_030 0.131802744 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
11 Hb_003992_280 0.133492133 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
12 Hb_017439_010 0.1354060137 - - putative actin-97 protein [Linum usitatissimum]
13 Hb_008686_010 0.1407753407 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000932_050 0.144603141 - - annexin [Manihot esculenta]
15 Hb_001401_040 0.1464079297 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
16 Hb_132840_150 0.1464390814 - - RNA-binding region-containing protein, putative [Ricinus communis]
17 Hb_000321_170 0.1467986491 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
18 Hb_006133_020 0.1477073049 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
19 Hb_000023_110 0.1483700394 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
20 Hb_012286_060 0.1485828061 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_010889_010 Hb_010889_010 Hb_004117_090 Hb_004117_090 Hb_010889_010--Hb_004117_090 Hb_010381_100 Hb_010381_100 Hb_010889_010--Hb_010381_100 Hb_003055_090 Hb_003055_090 Hb_010889_010--Hb_003055_090 Hb_003813_090 Hb_003813_090 Hb_010889_010--Hb_003813_090 Hb_005496_040 Hb_005496_040 Hb_010889_010--Hb_005496_040 Hb_003728_110 Hb_003728_110 Hb_010889_010--Hb_003728_110 Hb_004117_090--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_004117_090--Hb_000342_040 Hb_001544_090 Hb_001544_090 Hb_004117_090--Hb_001544_090 Hb_005976_110 Hb_005976_110 Hb_004117_090--Hb_005976_110 Hb_000190_170 Hb_000190_170 Hb_004117_090--Hb_000190_170 Hb_000032_420 Hb_000032_420 Hb_004117_090--Hb_000032_420 Hb_000527_050 Hb_000527_050 Hb_010381_100--Hb_000527_050 Hb_010381_100--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_010381_100--Hb_000003_750 Hb_003992_280 Hb_003992_280 Hb_010381_100--Hb_003992_280 Hb_001828_110 Hb_001828_110 Hb_010381_100--Hb_001828_110 Hb_001401_040 Hb_001401_040 Hb_003055_090--Hb_001401_040 Hb_003055_090--Hb_003728_110 Hb_017439_010 Hb_017439_010 Hb_003055_090--Hb_017439_010 Hb_003055_090--Hb_003992_280 Hb_001268_160 Hb_001268_160 Hb_003055_090--Hb_001268_160 Hb_001524_120 Hb_001524_120 Hb_003813_090--Hb_001524_120 Hb_000576_140 Hb_000576_140 Hb_003813_090--Hb_000576_140 Hb_006693_010 Hb_006693_010 Hb_003813_090--Hb_006693_010 Hb_000956_050 Hb_000956_050 Hb_003813_090--Hb_000956_050 Hb_003228_050 Hb_003228_050 Hb_003813_090--Hb_003228_050 Hb_005675_050 Hb_005675_050 Hb_003813_090--Hb_005675_050 Hb_005496_040--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_005496_040--Hb_000032_420 Hb_005496_040--Hb_000003_750 Hb_003728_110--Hb_003992_280 Hb_002292_080 Hb_002292_080 Hb_003728_110--Hb_002292_080 Hb_003606_050 Hb_003606_050 Hb_003728_110--Hb_003606_050 Hb_003935_040 Hb_003935_040 Hb_003728_110--Hb_003935_040 Hb_030685_010 Hb_030685_010 Hb_003728_110--Hb_030685_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.261023 0.637537 6.91859 8.01564 0.133449 0.138317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.175466 0.23984 0.643216 0.555237 2.59034

CAGE analysis