Hb_003728_110

Information

Type -
Description -
Location Contig3728: 90773-91225
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05860g
description hypothetical protein
nr
ID XP_011037098.1
description PREDICTED: calmodulin-like protein 3 [Populus euphratica]
swissprot
ID Q9SRR7
description Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1
trembl
ID A9P9T2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s05860g PE=2 SV=1
Gene Ontology
ID GO:0005777
description calmodulin-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003728_110 0.0 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
2 Hb_003992_280 0.0836551457 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
3 Hb_002292_080 0.1114239608 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_003606_050 0.1189298986 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
5 Hb_003935_040 0.1192804049 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
6 Hb_030685_010 0.123061671 - - -
7 Hb_003055_090 0.1243142191 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
8 Hb_000300_190 0.127953588 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
9 Hb_000093_090 0.1296219158 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
10 Hb_010889_010 0.1297761707 - - PREDICTED: myosin-12 [Jatropha curcas]
11 Hb_000020_050 0.1332880784 - - PREDICTED: expansin-A6 [Jatropha curcas]
12 Hb_000023_110 0.1363776807 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
13 Hb_002965_060 0.140255455 - - Protein COBRA precursor, putative [Ricinus communis]
14 Hb_003055_080 0.1402608005 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
15 Hb_006693_010 0.1413247888 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
16 Hb_000735_060 0.1418812118 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
17 Hb_001085_190 0.1429111151 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
18 Hb_000540_160 0.1450488491 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
19 Hb_000162_190 0.1454390492 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
20 Hb_000735_020 0.1459853379 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003728_110 Hb_003728_110 Hb_003992_280 Hb_003992_280 Hb_003728_110--Hb_003992_280 Hb_002292_080 Hb_002292_080 Hb_003728_110--Hb_002292_080 Hb_003606_050 Hb_003606_050 Hb_003728_110--Hb_003606_050 Hb_003935_040 Hb_003935_040 Hb_003728_110--Hb_003935_040 Hb_030685_010 Hb_030685_010 Hb_003728_110--Hb_030685_010 Hb_003055_090 Hb_003055_090 Hb_003728_110--Hb_003055_090 Hb_000300_190 Hb_000300_190 Hb_003992_280--Hb_000300_190 Hb_003055_080 Hb_003055_080 Hb_003992_280--Hb_003055_080 Hb_002965_060 Hb_002965_060 Hb_003992_280--Hb_002965_060 Hb_001195_550 Hb_001195_550 Hb_003992_280--Hb_001195_550 Hb_000020_050 Hb_000020_050 Hb_003992_280--Hb_000020_050 Hb_012518_080 Hb_012518_080 Hb_002292_080--Hb_012518_080 Hb_001348_010 Hb_001348_010 Hb_002292_080--Hb_001348_010 Hb_000093_090 Hb_000093_090 Hb_002292_080--Hb_000093_090 Hb_000735_020 Hb_000735_020 Hb_002292_080--Hb_000735_020 Hb_000162_190 Hb_000162_190 Hb_002292_080--Hb_000162_190 Hb_002292_080--Hb_003935_040 Hb_000735_060 Hb_000735_060 Hb_003606_050--Hb_000735_060 Hb_005568_020 Hb_005568_020 Hb_003606_050--Hb_005568_020 Hb_000008_200 Hb_000008_200 Hb_003606_050--Hb_000008_200 Hb_001085_190 Hb_001085_190 Hb_003606_050--Hb_001085_190 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_001936_180 Hb_001936_180 Hb_003606_050--Hb_001936_180 Hb_003935_040--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_003935_040--Hb_000345_230 Hb_000310_110 Hb_000310_110 Hb_003935_040--Hb_000310_110 Hb_003935_040--Hb_000020_050 Hb_015934_080 Hb_015934_080 Hb_003935_040--Hb_015934_080 Hb_009189_100 Hb_009189_100 Hb_003935_040--Hb_009189_100 Hb_003540_120 Hb_003540_120 Hb_030685_010--Hb_003540_120 Hb_030685_010--Hb_000093_090 Hb_030685_010--Hb_001188_050 Hb_030685_010--Hb_003055_080 Hb_002749_040 Hb_002749_040 Hb_030685_010--Hb_002749_040 Hb_001401_040 Hb_001401_040 Hb_003055_090--Hb_001401_040 Hb_017439_010 Hb_017439_010 Hb_003055_090--Hb_017439_010 Hb_010889_010 Hb_010889_010 Hb_003055_090--Hb_010889_010 Hb_003055_090--Hb_003992_280 Hb_001268_160 Hb_001268_160 Hb_003055_090--Hb_001268_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.39994 18.7664 113.304 178.825 1.31549 2.90037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.12504 4.23713 5.78129 24.5593 30.2466

CAGE analysis