Hb_001188_050

Information

Type -
Description -
Location Contig1188: 74184-74816
Sequence    

Annotation

kegg
ID rcu:RCOM_1399730
description hypothetical protein
nr
ID XP_002526357.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SK38
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1399730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05559: 74072-74840 , PASA_asmbl_05560: 74101-74974
cDNA
(Sanger)
(ID:Location)		 027_P05.ab1: 74157-74843 , 053_N19.ab1: 74072-74840

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001188_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_186247_010 0.1058888632 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
3 Hb_003606_050 0.1078086224 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
4 Hb_000963_050 0.1184537617 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
5 Hb_003540_120 0.1186244906 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_030685_010 0.1239924757 - - -
7 Hb_000274_050 0.1258821212 - - Squalene monooxygenase, putative [Ricinus communis]
8 Hb_001195_550 0.1266744926 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
9 Hb_012286_060 0.1295985044 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
10 Hb_001040_080 0.1298296687 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
11 Hb_003029_120 0.1300001159 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
12 Hb_003055_080 0.1319654952 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
13 Hb_002965_160 0.1336803033 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
14 Hb_000735_060 0.1344757185 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
15 Hb_001019_160 0.1413778502 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008511_040 0.1446912077 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_003728_110 0.1473515399 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
18 Hb_005245_140 0.1478519496 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
19 Hb_002463_050 0.1488489421 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000544_200 0.1512403811 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]

Gene co-expression network

sample Hb_001188_050 Hb_001188_050 Hb_186247_010 Hb_186247_010 Hb_001188_050--Hb_186247_010 Hb_003606_050 Hb_003606_050 Hb_001188_050--Hb_003606_050 Hb_000963_050 Hb_000963_050 Hb_001188_050--Hb_000963_050 Hb_003540_120 Hb_003540_120 Hb_001188_050--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_001188_050--Hb_030685_010 Hb_000274_050 Hb_000274_050 Hb_001188_050--Hb_000274_050 Hb_002539_050 Hb_002539_050 Hb_186247_010--Hb_002539_050 Hb_006829_070 Hb_006829_070 Hb_186247_010--Hb_006829_070 Hb_010315_100 Hb_010315_100 Hb_186247_010--Hb_010315_100 Hb_004631_170 Hb_004631_170 Hb_186247_010--Hb_004631_170 Hb_002026_020 Hb_002026_020 Hb_186247_010--Hb_002026_020 Hb_000735_060 Hb_000735_060 Hb_003606_050--Hb_000735_060 Hb_005568_020 Hb_005568_020 Hb_003606_050--Hb_005568_020 Hb_000008_200 Hb_000008_200 Hb_003606_050--Hb_000008_200 Hb_001085_190 Hb_001085_190 Hb_003606_050--Hb_001085_190 Hb_001936_180 Hb_001936_180 Hb_003606_050--Hb_001936_180 Hb_000963_050--Hb_000274_050 Hb_012286_060 Hb_012286_060 Hb_000963_050--Hb_012286_060 Hb_020805_040 Hb_020805_040 Hb_000963_050--Hb_020805_040 Hb_143629_120 Hb_143629_120 Hb_000963_050--Hb_143629_120 Hb_118283_010 Hb_118283_010 Hb_000963_050--Hb_118283_010 Hb_003540_120--Hb_030685_010 Hb_001597_030 Hb_001597_030 Hb_003540_120--Hb_001597_030 Hb_003540_120--Hb_003606_050 Hb_001823_090 Hb_001823_090 Hb_003540_120--Hb_001823_090 Hb_002681_120 Hb_002681_120 Hb_003540_120--Hb_002681_120 Hb_000093_090 Hb_000093_090 Hb_030685_010--Hb_000093_090 Hb_003728_110 Hb_003728_110 Hb_030685_010--Hb_003728_110 Hb_003055_080 Hb_003055_080 Hb_030685_010--Hb_003055_080 Hb_002749_040 Hb_002749_040 Hb_030685_010--Hb_002749_040 Hb_005000_010 Hb_005000_010 Hb_000274_050--Hb_005000_010 Hb_002876_200 Hb_002876_200 Hb_000274_050--Hb_002876_200 Hb_001040_080 Hb_001040_080 Hb_000274_050--Hb_001040_080 Hb_001439_210 Hb_001439_210 Hb_000274_050--Hb_001439_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.01707 24.5572 89.7924 107.28 8.42849 6.60147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28235 3.11445 1.73575 21.4715 27.5513

CAGE analysis