Hb_006829_070

Information

Type -
Description -
Location Contig6829: 53009-53494
Sequence    

Annotation

kegg
ID rcu:RCOM_0586940
description hypothetical protein
nr
ID XP_012070777.1
description PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00847 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53892: 51479-54115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006829_070 0.0 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
2 Hb_012762_060 0.0914275005 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
3 Hb_002026_020 0.1024965765 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
4 Hb_003680_030 0.1032835699 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
5 Hb_000424_030 0.1036646559 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002217_320 0.1043445375 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
7 Hb_006925_050 0.1050890616 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
8 Hb_186247_010 0.1061253126 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
9 Hb_002488_010 0.1101191567 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
10 Hb_005357_110 0.1106233351 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
11 Hb_004730_020 0.1191996144 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
12 Hb_012807_150 0.1200068025 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
13 Hb_005511_130 0.1240521859 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
14 Hb_004631_170 0.1265012864 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000134_120 0.1269560421 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
16 Hb_000915_130 0.1307545177 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
17 Hb_000622_330 0.1320530158 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
18 Hb_000968_060 0.1326823883 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
19 Hb_029253_010 0.1335310354 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
20 Hb_002900_150 0.1337476396 - - PREDICTED: syntaxin-81 [Jatropha curcas]

Gene co-expression network

sample Hb_006829_070 Hb_006829_070 Hb_012762_060 Hb_012762_060 Hb_006829_070--Hb_012762_060 Hb_002026_020 Hb_002026_020 Hb_006829_070--Hb_002026_020 Hb_003680_030 Hb_003680_030 Hb_006829_070--Hb_003680_030 Hb_000424_030 Hb_000424_030 Hb_006829_070--Hb_000424_030 Hb_002217_320 Hb_002217_320 Hb_006829_070--Hb_002217_320 Hb_006925_050 Hb_006925_050 Hb_006829_070--Hb_006925_050 Hb_012762_060--Hb_003680_030 Hb_012762_060--Hb_002217_320 Hb_002488_010 Hb_002488_010 Hb_012762_060--Hb_002488_010 Hb_012762_060--Hb_002026_020 Hb_000134_120 Hb_000134_120 Hb_012762_060--Hb_000134_120 Hb_001328_050 Hb_001328_050 Hb_002026_020--Hb_001328_050 Hb_000030_020 Hb_000030_020 Hb_002026_020--Hb_000030_020 Hb_002900_150 Hb_002900_150 Hb_002026_020--Hb_002900_150 Hb_002026_020--Hb_003680_030 Hb_003680_030--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_003680_030--Hb_012807_150 Hb_003680_030--Hb_002488_010 Hb_000959_300 Hb_000959_300 Hb_003680_030--Hb_000959_300 Hb_000603_020 Hb_000603_020 Hb_000424_030--Hb_000603_020 Hb_000271_220 Hb_000271_220 Hb_000424_030--Hb_000271_220 Hb_000424_030--Hb_002217_320 Hb_000622_330 Hb_000622_330 Hb_000424_030--Hb_000622_330 Hb_000424_030--Hb_006925_050 Hb_000638_060 Hb_000638_060 Hb_002217_320--Hb_000638_060 Hb_001847_050 Hb_001847_050 Hb_002217_320--Hb_001847_050 Hb_003964_080 Hb_003964_080 Hb_002217_320--Hb_003964_080 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_005511_130 Hb_005511_130 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_004730_020 Hb_004730_020 Hb_006925_050--Hb_004730_020 Hb_006925_050--Hb_001847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36191 4.29544 8.85588 14.391 1.89214 1.73469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54747 0.77359 0.558308 2.21132 4.9263

CAGE analysis