Hb_001328_050

Information

Type -
Description -
Location Contig1328: 48798-56599
Sequence    

Annotation

kegg
ID rcu:RCOM_1119070
description hypothetical protein
nr
ID XP_012080637.1
description PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KG47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13747 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09314: 48691-56584 , PASA_asmbl_09315: 48800-56519 , PASA_asmbl_09317: 49759-49867 , PASA_asmbl_09318: 54231-54610 , PASA_asmbl_09319: 55708-56244 , PASA_asmbl_09320: 53650-62515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001328_050 0.0 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
2 Hb_002026_020 0.1009417658 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
3 Hb_002900_150 0.1136061554 - - PREDICTED: syntaxin-81 [Jatropha curcas]
4 Hb_000968_060 0.1169118381 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
5 Hb_000915_130 0.1282805678 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
6 Hb_018133_100 0.1399203733 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_003090_160 0.1448024932 - - -
8 Hb_012762_060 0.1451269649 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
9 Hb_005511_130 0.1462009839 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
10 Hb_002488_010 0.1484780174 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
11 Hb_000984_220 0.1511532226 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
12 Hb_002151_010 0.1519307927 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
13 Hb_000032_410 0.1541029286 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
14 Hb_000260_490 0.1554699302 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
15 Hb_003680_030 0.1571238808 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
16 Hb_000042_110 0.1576447117 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
17 Hb_004730_020 0.1590646986 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
18 Hb_006829_070 0.1591223299 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
19 Hb_003964_080 0.1615701129 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
20 Hb_002281_010 0.1633383565 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]

Gene co-expression network

sample Hb_001328_050 Hb_001328_050 Hb_002026_020 Hb_002026_020 Hb_001328_050--Hb_002026_020 Hb_002900_150 Hb_002900_150 Hb_001328_050--Hb_002900_150 Hb_000968_060 Hb_000968_060 Hb_001328_050--Hb_000968_060 Hb_000915_130 Hb_000915_130 Hb_001328_050--Hb_000915_130 Hb_018133_100 Hb_018133_100 Hb_001328_050--Hb_018133_100 Hb_003090_160 Hb_003090_160 Hb_001328_050--Hb_003090_160 Hb_006829_070 Hb_006829_070 Hb_002026_020--Hb_006829_070 Hb_000030_020 Hb_000030_020 Hb_002026_020--Hb_000030_020 Hb_012762_060 Hb_012762_060 Hb_002026_020--Hb_012762_060 Hb_002026_020--Hb_002900_150 Hb_003680_030 Hb_003680_030 Hb_002026_020--Hb_003680_030 Hb_002900_150--Hb_000968_060 Hb_000866_070 Hb_000866_070 Hb_002900_150--Hb_000866_070 Hb_002488_010 Hb_002488_010 Hb_002900_150--Hb_002488_010 Hb_005511_130 Hb_005511_130 Hb_002900_150--Hb_005511_130 Hb_004158_050 Hb_004158_050 Hb_002900_150--Hb_004158_050 Hb_005357_110 Hb_005357_110 Hb_002900_150--Hb_005357_110 Hb_000968_060--Hb_002488_010 Hb_000968_060--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_000968_060--Hb_000001_090 Hb_003849_160 Hb_003849_160 Hb_000968_060--Hb_003849_160 Hb_000032_410 Hb_000032_410 Hb_000968_060--Hb_000032_410 Hb_000915_130--Hb_000032_410 Hb_000915_130--Hb_005357_110 Hb_000915_130--Hb_005511_130 Hb_000042_110 Hb_000042_110 Hb_000915_130--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000915_130--Hb_000260_490 Hb_004730_020 Hb_004730_020 Hb_000915_130--Hb_004730_020 Hb_119583_020 Hb_119583_020 Hb_018133_100--Hb_119583_020 Hb_018133_100--Hb_002026_020 Hb_002151_010 Hb_002151_010 Hb_018133_100--Hb_002151_010 Hb_004324_210 Hb_004324_210 Hb_018133_100--Hb_004324_210 Hb_018133_100--Hb_000042_110 Hb_011930_100 Hb_011930_100 Hb_003090_160--Hb_011930_100 Hb_000671_030 Hb_000671_030 Hb_003090_160--Hb_000671_030 Hb_001754_060 Hb_001754_060 Hb_003090_160--Hb_001754_060 Hb_001675_320 Hb_001675_320 Hb_003090_160--Hb_001675_320 Hb_000523_030 Hb_000523_030 Hb_003090_160--Hb_000523_030 Hb_003777_130 Hb_003777_130 Hb_003090_160--Hb_003777_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67591 15.3239 29.9388 29.5268 7.3033 7.6613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05608 2.60312 3.6196 2.86585 10.9904

CAGE analysis