Hb_003090_160

Information

Type -
Description -
Location Contig3090: 168774-171259
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32641: 165167-171305 , PASA_asmbl_32644: 169816-170305
cDNA
(Sanger)
(ID:Location)		 017_C16.ab1: 166618-171002 , 022_A13.ab1: 166821-171005 , 022_G08.ab1: 169535-171179 , 022_I19.ab1: 169398-171182 , 024_F04.ab1: 168500-171182

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_160 0.0 - - -
2 Hb_011930_100 0.115617262 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
3 Hb_000671_030 0.1205029929 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
4 Hb_001754_060 0.1227173409 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
5 Hb_001675_320 0.1255390886 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
6 Hb_000523_030 0.1257617007 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
7 Hb_003777_130 0.1258882082 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
8 Hb_000200_170 0.1321925012 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
9 Hb_000203_270 0.1328340484 - - alpha-xylosidase, putative [Ricinus communis]
10 Hb_017948_030 0.1329352283 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
11 Hb_001878_060 0.1332353619 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
12 Hb_002909_100 0.1352178234 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
13 Hb_000853_330 0.1370003094 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
14 Hb_000363_180 0.1377555875 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
15 Hb_000815_310 0.1385689237 - - protein kinase, putative [Ricinus communis]
16 Hb_000197_180 0.1392975977 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
17 Hb_000968_060 0.1396597165 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
18 Hb_000196_010 0.1402144957 - - Patellin-5, putative [Ricinus communis]
19 Hb_000470_110 0.1406692721 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
20 Hb_000853_220 0.1412317533 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003090_160 Hb_003090_160 Hb_011930_100 Hb_011930_100 Hb_003090_160--Hb_011930_100 Hb_000671_030 Hb_000671_030 Hb_003090_160--Hb_000671_030 Hb_001754_060 Hb_001754_060 Hb_003090_160--Hb_001754_060 Hb_001675_320 Hb_001675_320 Hb_003090_160--Hb_001675_320 Hb_000523_030 Hb_000523_030 Hb_003090_160--Hb_000523_030 Hb_003777_130 Hb_003777_130 Hb_003090_160--Hb_003777_130 Hb_000045_160 Hb_000045_160 Hb_011930_100--Hb_000045_160 Hb_000815_310 Hb_000815_310 Hb_011930_100--Hb_000815_310 Hb_011930_100--Hb_003777_130 Hb_000640_190 Hb_000640_190 Hb_011930_100--Hb_000640_190 Hb_001396_070 Hb_001396_070 Hb_011930_100--Hb_001396_070 Hb_033152_090 Hb_033152_090 Hb_011930_100--Hb_033152_090 Hb_000671_030--Hb_003777_130 Hb_012760_030 Hb_012760_030 Hb_000671_030--Hb_012760_030 Hb_003849_220 Hb_003849_220 Hb_000671_030--Hb_003849_220 Hb_001623_110 Hb_001623_110 Hb_000671_030--Hb_001623_110 Hb_017948_030 Hb_017948_030 Hb_000671_030--Hb_017948_030 Hb_007919_110 Hb_007919_110 Hb_000671_030--Hb_007919_110 Hb_002289_150 Hb_002289_150 Hb_001754_060--Hb_002289_150 Hb_017159_010 Hb_017159_010 Hb_001754_060--Hb_017159_010 Hb_000203_270 Hb_000203_270 Hb_001754_060--Hb_000203_270 Hb_000797_060 Hb_000797_060 Hb_001754_060--Hb_000797_060 Hb_001754_060--Hb_000523_030 Hb_001103_090 Hb_001103_090 Hb_001675_320--Hb_001103_090 Hb_001878_060 Hb_001878_060 Hb_001675_320--Hb_001878_060 Hb_000205_280 Hb_000205_280 Hb_001675_320--Hb_000205_280 Hb_001675_320--Hb_003849_220 Hb_028077_020 Hb_028077_020 Hb_001675_320--Hb_028077_020 Hb_003599_030 Hb_003599_030 Hb_001675_320--Hb_003599_030 Hb_000395_040 Hb_000395_040 Hb_000523_030--Hb_000395_040 Hb_000523_030--Hb_003777_130 Hb_000523_030--Hb_000671_030 Hb_000523_030--Hb_000203_270 Hb_000608_280 Hb_000608_280 Hb_000523_030--Hb_000608_280 Hb_000258_420 Hb_000258_420 Hb_000523_030--Hb_000258_420 Hb_003777_130--Hb_000258_420 Hb_003777_130--Hb_000815_310 Hb_004375_110 Hb_004375_110 Hb_003777_130--Hb_004375_110 Hb_003777_130--Hb_033152_090 Hb_003777_130--Hb_000640_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.962 89.4495 72.9073 107.404 30.4073 35.4412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0031 10.4063 10.3396 22.5479 49.7615

CAGE analysis