Hb_017159_010

Information

Type -
Description -
Location Contig17159: 853-1715
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16045: 955-1636 , PASA_asmbl_16046: 1696-1917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017159_010 0.0 - - -
2 Hb_002250_050 0.1191762831 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
3 Hb_001754_060 0.1195593062 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
4 Hb_000200_170 0.1201662589 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
5 Hb_001255_010 0.1355759737 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
6 Hb_002849_070 0.136974128 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
7 Hb_001178_080 0.1394708162 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
8 Hb_000056_080 0.1422169352 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
9 Hb_000203_270 0.1425226789 - - alpha-xylosidase, putative [Ricinus communis]
10 Hb_160405_010 0.1476237231 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_154538_010 0.15171244 - - -
12 Hb_000523_030 0.1531360228 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
13 Hb_001818_060 0.1533024184 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
14 Hb_003090_160 0.1537689199 - - -
15 Hb_002173_030 0.1560665598 - - hypothetical protein JCGZ_12466 [Jatropha curcas]
16 Hb_000363_180 0.1582181461 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
17 Hb_000196_010 0.1590219036 - - Patellin-5, putative [Ricinus communis]
18 Hb_004631_170 0.1604447109 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004987_020 0.1606488363 - - -
20 Hb_000342_140 0.1606957868 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]

Gene co-expression network

sample Hb_017159_010 Hb_017159_010 Hb_002250_050 Hb_002250_050 Hb_017159_010--Hb_002250_050 Hb_001754_060 Hb_001754_060 Hb_017159_010--Hb_001754_060 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_001255_010 Hb_001255_010 Hb_017159_010--Hb_001255_010 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070 Hb_001178_080 Hb_001178_080 Hb_017159_010--Hb_001178_080 Hb_002250_050--Hb_001255_010 Hb_000523_030 Hb_000523_030 Hb_002250_050--Hb_000523_030 Hb_003305_030 Hb_003305_030 Hb_002250_050--Hb_003305_030 Hb_004837_050 Hb_004837_050 Hb_002250_050--Hb_004837_050 Hb_009247_010 Hb_009247_010 Hb_002250_050--Hb_009247_010 Hb_002289_150 Hb_002289_150 Hb_001754_060--Hb_002289_150 Hb_003090_160 Hb_003090_160 Hb_001754_060--Hb_003090_160 Hb_000203_270 Hb_000203_270 Hb_001754_060--Hb_000203_270 Hb_000797_060 Hb_000797_060 Hb_001754_060--Hb_000797_060 Hb_001754_060--Hb_000523_030 Hb_000200_170--Hb_002849_070 Hb_000056_080 Hb_000056_080 Hb_000200_170--Hb_000056_080 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_000200_170--Hb_000203_270 Hb_143766_030 Hb_143766_030 Hb_000200_170--Hb_143766_030 Hb_001818_060 Hb_001818_060 Hb_000200_170--Hb_001818_060 Hb_001255_010--Hb_000523_030 Hb_028487_130 Hb_028487_130 Hb_001255_010--Hb_028487_130 Hb_178793_010 Hb_178793_010 Hb_001255_010--Hb_178793_010 Hb_001255_010--Hb_000203_270 Hb_002849_070--Hb_000056_080 Hb_002849_070--Hb_000203_270 Hb_000735_140 Hb_000735_140 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_002849_070--Hb_001818_060 Hb_005016_020 Hb_005016_020 Hb_001178_080--Hb_005016_020 Hb_012727_010 Hb_012727_010 Hb_001178_080--Hb_012727_010 Hb_000000_110 Hb_000000_110 Hb_001178_080--Hb_000000_110 Hb_001596_020 Hb_001596_020 Hb_001178_080--Hb_001596_020 Hb_006949_060 Hb_006949_060 Hb_001178_080--Hb_006949_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4641 116.384 59.6955 167.602 13.6097 37.402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4297 13.1902 4.59143 34.3927 31.6939

CAGE analysis