Hb_001255_010

Information

Type -
Description -
Location Contig1255: 3688-9980
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010534159.1
description PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
swissprot
ID -
description -
trembl
ID M0T996
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005622
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001255_010 0.0 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
2 Hb_002250_050 0.1026594667 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
3 Hb_017159_010 0.1355759737 - - -
4 Hb_000523_030 0.1370171408 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
5 Hb_028487_130 0.1531718781 - - kinase family protein [Populus trichocarpa]
6 Hb_178793_010 0.1642313578 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
7 Hb_000203_270 0.1664266317 - - alpha-xylosidase, putative [Ricinus communis]
8 Hb_018691_020 0.1684920057 - - -
9 Hb_003305_030 0.1710952673 - - -
10 Hb_010315_100 0.1720272603 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
11 Hb_001818_060 0.1721423191 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
12 Hb_080332_010 0.1726034691 - - hypothetical protein POPTR_0018s10590g [Populus trichocarpa]
13 Hb_005694_010 0.1752487093 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
14 Hb_000363_180 0.1752581898 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
15 Hb_000196_010 0.1752856856 - - Patellin-5, putative [Ricinus communis]
16 Hb_063716_090 0.176284879 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001357_280 0.1774967125 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
18 Hb_003849_220 0.1776042184 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
19 Hb_000200_170 0.1776365167 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
20 Hb_000740_090 0.1778302202 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001255_010 Hb_001255_010 Hb_002250_050 Hb_002250_050 Hb_001255_010--Hb_002250_050 Hb_017159_010 Hb_017159_010 Hb_001255_010--Hb_017159_010 Hb_000523_030 Hb_000523_030 Hb_001255_010--Hb_000523_030 Hb_028487_130 Hb_028487_130 Hb_001255_010--Hb_028487_130 Hb_178793_010 Hb_178793_010 Hb_001255_010--Hb_178793_010 Hb_000203_270 Hb_000203_270 Hb_001255_010--Hb_000203_270 Hb_002250_050--Hb_017159_010 Hb_002250_050--Hb_000523_030 Hb_003305_030 Hb_003305_030 Hb_002250_050--Hb_003305_030 Hb_004837_050 Hb_004837_050 Hb_002250_050--Hb_004837_050 Hb_009247_010 Hb_009247_010 Hb_002250_050--Hb_009247_010 Hb_001754_060 Hb_001754_060 Hb_017159_010--Hb_001754_060 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070 Hb_001178_080 Hb_001178_080 Hb_017159_010--Hb_001178_080 Hb_000395_040 Hb_000395_040 Hb_000523_030--Hb_000395_040 Hb_003777_130 Hb_003777_130 Hb_000523_030--Hb_003777_130 Hb_000671_030 Hb_000671_030 Hb_000523_030--Hb_000671_030 Hb_000523_030--Hb_000203_270 Hb_000608_280 Hb_000608_280 Hb_000523_030--Hb_000608_280 Hb_000258_420 Hb_000258_420 Hb_000523_030--Hb_000258_420 Hb_001135_030 Hb_001135_030 Hb_028487_130--Hb_001135_030 Hb_018691_020 Hb_018691_020 Hb_028487_130--Hb_018691_020 Hb_028487_130--Hb_000203_270 Hb_028487_130--Hb_002849_070 Hb_003849_220 Hb_003849_220 Hb_028487_130--Hb_003849_220 Hb_010315_100 Hb_010315_100 Hb_028487_130--Hb_010315_100 Hb_178793_010--Hb_018691_020 Hb_178793_010--Hb_028487_130 Hb_178793_010--Hb_002849_070 Hb_178793_010--Hb_000200_170 Hb_005000_050 Hb_005000_050 Hb_178793_010--Hb_005000_050 Hb_000920_220 Hb_000920_220 Hb_178793_010--Hb_000920_220 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_000203_270--Hb_002849_070 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_000203_270--Hb_000200_170 Hb_000203_270--Hb_001135_030 Hb_003599_030 Hb_003599_030 Hb_000203_270--Hb_003599_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118399 0.351746 0.246197 0.48529 0.0851482 0.0980946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0503913 0.0792955 0 0.13421 0.083532

CAGE analysis