Hb_002250_050

Information

Type -
Description -
Location Contig2250: 77630-78982
Sequence    

Annotation

kegg
ID rcu:RCOM_0815040
description hypothetical protein
nr
ID XP_012078288.1
description PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17326 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23430: 79356-79577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002250_050 0.0 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
2 Hb_001255_010 0.1026594667 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
3 Hb_017159_010 0.1191762831 - - -
4 Hb_000523_030 0.1250671299 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
5 Hb_003305_030 0.1387329832 - - -
6 Hb_004837_050 0.1407939467 - - -
7 Hb_009247_010 0.1443730543 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
8 Hb_000203_270 0.1474552803 - - alpha-xylosidase, putative [Ricinus communis]
9 Hb_001135_030 0.1584164713 - - PREDICTED: interaptin-like [Jatropha curcas]
10 Hb_003090_160 0.1584284524 - - -
11 Hb_028487_130 0.1596023487 - - kinase family protein [Populus trichocarpa]
12 Hb_000000_340 0.1597241342 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
13 Hb_080332_010 0.1618783032 - - hypothetical protein POPTR_0018s10590g [Populus trichocarpa]
14 Hb_000363_180 0.1623433687 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
15 Hb_164945_010 0.1636443478 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
16 Hb_004987_020 0.1638212761 - - -
17 Hb_000242_030 0.1641451124 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
18 Hb_041895_040 0.1649248692 - - conserved hypothetical protein [Ricinus communis]
19 Hb_145317_010 0.1651170754 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
20 Hb_114943_020 0.1668233529 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002250_050 Hb_002250_050 Hb_001255_010 Hb_001255_010 Hb_002250_050--Hb_001255_010 Hb_017159_010 Hb_017159_010 Hb_002250_050--Hb_017159_010 Hb_000523_030 Hb_000523_030 Hb_002250_050--Hb_000523_030 Hb_003305_030 Hb_003305_030 Hb_002250_050--Hb_003305_030 Hb_004837_050 Hb_004837_050 Hb_002250_050--Hb_004837_050 Hb_009247_010 Hb_009247_010 Hb_002250_050--Hb_009247_010 Hb_001255_010--Hb_017159_010 Hb_001255_010--Hb_000523_030 Hb_028487_130 Hb_028487_130 Hb_001255_010--Hb_028487_130 Hb_178793_010 Hb_178793_010 Hb_001255_010--Hb_178793_010 Hb_000203_270 Hb_000203_270 Hb_001255_010--Hb_000203_270 Hb_001754_060 Hb_001754_060 Hb_017159_010--Hb_001754_060 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070 Hb_001178_080 Hb_001178_080 Hb_017159_010--Hb_001178_080 Hb_000395_040 Hb_000395_040 Hb_000523_030--Hb_000395_040 Hb_003777_130 Hb_003777_130 Hb_000523_030--Hb_003777_130 Hb_000671_030 Hb_000671_030 Hb_000523_030--Hb_000671_030 Hb_000523_030--Hb_000203_270 Hb_000608_280 Hb_000608_280 Hb_000523_030--Hb_000608_280 Hb_000258_420 Hb_000258_420 Hb_000523_030--Hb_000258_420 Hb_041895_040 Hb_041895_040 Hb_003305_030--Hb_041895_040 Hb_000692_210 Hb_000692_210 Hb_003305_030--Hb_000692_210 Hb_000438_090 Hb_000438_090 Hb_003305_030--Hb_000438_090 Hb_171718_020 Hb_171718_020 Hb_003305_030--Hb_171718_020 Hb_164945_010 Hb_164945_010 Hb_003305_030--Hb_164945_010 Hb_002740_040 Hb_002740_040 Hb_004837_050--Hb_002740_040 Hb_000470_110 Hb_000470_110 Hb_004837_050--Hb_000470_110 Hb_000242_030 Hb_000242_030 Hb_004837_050--Hb_000242_030 Hb_001878_060 Hb_001878_060 Hb_004837_050--Hb_001878_060 Hb_087587_010 Hb_087587_010 Hb_004837_050--Hb_087587_010 Hb_000098_050 Hb_000098_050 Hb_009247_010--Hb_000098_050 Hb_000116_150 Hb_000116_150 Hb_009247_010--Hb_000116_150 Hb_005062_110 Hb_005062_110 Hb_009247_010--Hb_005062_110 Hb_000890_030 Hb_000890_030 Hb_009247_010--Hb_000890_030 Hb_000818_100 Hb_000818_100 Hb_009247_010--Hb_000818_100 Hb_009222_070 Hb_009222_070 Hb_009247_010--Hb_009222_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.86584 3.17367 2.71354 4.16698 0.623391 1.61421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.563207 0.581521 0.103615 1.19557 0.691986

CAGE analysis