Hb_087587_010

Information

Type -
Description -
Location Contig87587: 3-968
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61256: 144-314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087587_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_002740_040 0.1029807982 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
3 Hb_000165_120 0.107569567 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
4 Hb_000917_100 0.1373762889 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
5 Hb_010346_020 0.1381915701 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
6 Hb_002259_110 0.1388599809 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
7 Hb_004837_050 0.1424111597 - - -
8 Hb_002016_060 0.1455538541 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
9 Hb_003050_150 0.1475666605 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
10 Hb_014720_030 0.1526258249 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
11 Hb_000362_090 0.1533027542 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
12 Hb_002553_010 0.1538640339 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
13 Hb_000470_110 0.1542825566 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
14 Hb_011920_020 0.1544619355 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
15 Hb_002685_030 0.156713509 - - PREDICTED: protein SMG7L [Jatropha curcas]
16 Hb_000630_030 0.1568778336 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
17 Hb_007777_010 0.1580297621 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
18 Hb_002092_070 0.1596075958 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
19 Hb_002025_270 0.1609333422 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
20 Hb_000732_230 0.1609680807 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_087587_010 Hb_087587_010 Hb_002740_040 Hb_002740_040 Hb_087587_010--Hb_002740_040 Hb_000165_120 Hb_000165_120 Hb_087587_010--Hb_000165_120 Hb_000917_100 Hb_000917_100 Hb_087587_010--Hb_000917_100 Hb_010346_020 Hb_010346_020 Hb_087587_010--Hb_010346_020 Hb_002259_110 Hb_002259_110 Hb_087587_010--Hb_002259_110 Hb_004837_050 Hb_004837_050 Hb_087587_010--Hb_004837_050 Hb_002685_030 Hb_002685_030 Hb_002740_040--Hb_002685_030 Hb_014720_030 Hb_014720_030 Hb_002740_040--Hb_014720_030 Hb_000470_110 Hb_000470_110 Hb_002740_040--Hb_000470_110 Hb_000950_040 Hb_000950_040 Hb_002740_040--Hb_000950_040 Hb_114943_020 Hb_114943_020 Hb_002740_040--Hb_114943_020 Hb_000165_120--Hb_002259_110 Hb_001373_160 Hb_001373_160 Hb_000165_120--Hb_001373_160 Hb_000165_110 Hb_000165_110 Hb_000165_120--Hb_000165_110 Hb_000165_120--Hb_010346_020 Hb_002553_010 Hb_002553_010 Hb_000165_120--Hb_002553_010 Hb_002005_120 Hb_002005_120 Hb_000917_100--Hb_002005_120 Hb_000866_080 Hb_000866_080 Hb_000917_100--Hb_000866_080 Hb_002016_060 Hb_002016_060 Hb_000917_100--Hb_002016_060 Hb_015183_100 Hb_015183_100 Hb_000917_100--Hb_015183_100 Hb_002092_070 Hb_002092_070 Hb_000917_100--Hb_002092_070 Hb_001221_090 Hb_001221_090 Hb_000917_100--Hb_001221_090 Hb_096819_010 Hb_096819_010 Hb_010346_020--Hb_096819_010 Hb_000345_490 Hb_000345_490 Hb_010346_020--Hb_000345_490 Hb_000988_030 Hb_000988_030 Hb_010346_020--Hb_000988_030 Hb_010346_020--Hb_002259_110 Hb_001484_100 Hb_001484_100 Hb_010346_020--Hb_001484_100 Hb_010287_030 Hb_010287_030 Hb_010346_020--Hb_010287_030 Hb_002259_110--Hb_002553_010 Hb_152910_010 Hb_152910_010 Hb_002259_110--Hb_152910_010 Hb_001133_090 Hb_001133_090 Hb_002259_110--Hb_001133_090 Hb_075203_010 Hb_075203_010 Hb_002259_110--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_002259_110--Hb_000134_250 Hb_002259_110--Hb_001373_160 Hb_004837_050--Hb_002740_040 Hb_004837_050--Hb_000470_110 Hb_000242_030 Hb_000242_030 Hb_004837_050--Hb_000242_030 Hb_001878_060 Hb_001878_060 Hb_004837_050--Hb_001878_060 Hb_002250_050 Hb_002250_050 Hb_004837_050--Hb_002250_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.58492 13.0249 9.01388 8.65438 4.50624 6.70403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01436 0.797681 0.0855639 8.12317 5.41613

CAGE analysis