Hb_000242_030

Information

Type -
Description -
Location Contig242: 32608-50613
Sequence    

Annotation

kegg
ID cit:102608003
description uncharacterized LOC102608003
nr
ID XP_006492120.1
description PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
swissprot
ID F4J5S1
description Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=1
trembl
ID V4SU32
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024937mg PE=4 SV=1
Gene Ontology
ID GO:0005829
description clustered mitochondria protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25327: 34533-37787 , PASA_asmbl_25328: 40643-40786 , PASA_asmbl_25329: 41165-41280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000242_030 0.0 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
2 Hb_004837_050 0.1306779643 - - -
3 Hb_000045_160 0.1326817132 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
4 Hb_025964_040 0.1464782155 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
5 Hb_000470_110 0.1499475095 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
6 Hb_000523_030 0.1544680257 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
7 Hb_000631_090 0.1544860228 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
8 Hb_000258_040 0.1559134173 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
9 Hb_114943_020 0.1584547577 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
10 Hb_011930_100 0.1634800224 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
11 Hb_000196_010 0.1639181986 - - Patellin-5, putative [Ricinus communis]
12 Hb_002250_050 0.1641451124 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
13 Hb_001277_040 0.1657329987 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
14 Hb_000363_180 0.1697125818 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
15 Hb_002740_040 0.1700107942 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
16 Hb_000015_150 0.1737553732 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
17 Hb_009745_010 0.174141383 - - cellulose synthase-like protein [Populus tomentosa]
18 Hb_001878_060 0.1746113062 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
19 Hb_007777_010 0.1752513329 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
20 Hb_000815_310 0.1800064094 - - protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000242_030 Hb_000242_030 Hb_004837_050 Hb_004837_050 Hb_000242_030--Hb_004837_050 Hb_000045_160 Hb_000045_160 Hb_000242_030--Hb_000045_160 Hb_025964_040 Hb_025964_040 Hb_000242_030--Hb_025964_040 Hb_000470_110 Hb_000470_110 Hb_000242_030--Hb_000470_110 Hb_000523_030 Hb_000523_030 Hb_000242_030--Hb_000523_030 Hb_000631_090 Hb_000631_090 Hb_000242_030--Hb_000631_090 Hb_002740_040 Hb_002740_040 Hb_004837_050--Hb_002740_040 Hb_004837_050--Hb_000470_110 Hb_001878_060 Hb_001878_060 Hb_004837_050--Hb_001878_060 Hb_002250_050 Hb_002250_050 Hb_004837_050--Hb_002250_050 Hb_087587_010 Hb_087587_010 Hb_004837_050--Hb_087587_010 Hb_000640_190 Hb_000640_190 Hb_000045_160--Hb_000640_190 Hb_011930_100 Hb_011930_100 Hb_000045_160--Hb_011930_100 Hb_033152_090 Hb_033152_090 Hb_000045_160--Hb_033152_090 Hb_088584_010 Hb_088584_010 Hb_000045_160--Hb_088584_010 Hb_002249_020 Hb_002249_020 Hb_000045_160--Hb_002249_020 Hb_000815_310 Hb_000815_310 Hb_000045_160--Hb_000815_310 Hb_007777_010 Hb_007777_010 Hb_025964_040--Hb_007777_010 Hb_001114_020 Hb_001114_020 Hb_025964_040--Hb_001114_020 Hb_025964_040--Hb_087587_010 Hb_025964_040--Hb_000045_160 Hb_025964_040--Hb_000631_090 Hb_002809_160 Hb_002809_160 Hb_000470_110--Hb_002809_160 Hb_004718_060 Hb_004718_060 Hb_000470_110--Hb_004718_060 Hb_000470_110--Hb_001878_060 Hb_011457_140 Hb_011457_140 Hb_000470_110--Hb_011457_140 Hb_000470_110--Hb_000631_090 Hb_054865_020 Hb_054865_020 Hb_000470_110--Hb_054865_020 Hb_000395_040 Hb_000395_040 Hb_000523_030--Hb_000395_040 Hb_003777_130 Hb_003777_130 Hb_000523_030--Hb_003777_130 Hb_000671_030 Hb_000671_030 Hb_000523_030--Hb_000671_030 Hb_000203_270 Hb_000203_270 Hb_000523_030--Hb_000203_270 Hb_000608_280 Hb_000608_280 Hb_000523_030--Hb_000608_280 Hb_000258_420 Hb_000258_420 Hb_000523_030--Hb_000258_420 Hb_000631_090--Hb_000045_160 Hb_000631_090--Hb_054865_020 Hb_000631_090--Hb_011930_100 Hb_002307_080 Hb_002307_080 Hb_000631_090--Hb_002307_080 Hb_000803_090 Hb_000803_090 Hb_000631_090--Hb_000803_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.780301 1.34398 1.33031 1.58654 0.0804957 0.805005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130587 0.205489 0.155275 0.564856 0.735195

CAGE analysis