Hb_002740_040

Information

Type -
Description -
Location Contig2740: 107743-112064
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00350g
description hypothetical protein
nr
ID XP_006382252.1
description hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GCT7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s00350g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_040 0.0 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
2 Hb_002685_030 0.1024084877 - - PREDICTED: protein SMG7L [Jatropha curcas]
3 Hb_087587_010 0.1029807982 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_014720_030 0.1152623081 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
5 Hb_000470_110 0.1216955185 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
6 Hb_000950_040 0.1248666092 - - cation-transporting atpase plant, putative [Ricinus communis]
7 Hb_114943_020 0.1253963791 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
8 Hb_000732_230 0.1271377536 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
9 Hb_000363_180 0.1272457237 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
10 Hb_062558_010 0.128060557 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
11 Hb_004837_050 0.1292516577 - - -
12 Hb_000318_040 0.1306756833 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
13 Hb_000196_010 0.138786992 - - Patellin-5, putative [Ricinus communis]
14 Hb_003050_150 0.1416947491 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
15 Hb_005772_030 0.1422878942 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
16 Hb_001522_040 0.144547541 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_002316_170 0.1483938926 - - purine permease, putative [Ricinus communis]
18 Hb_000917_100 0.1511487896 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
19 Hb_009745_010 0.1517415388 - - cellulose synthase-like protein [Populus tomentosa]
20 Hb_146510_010 0.1533171188 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002740_040 Hb_002740_040 Hb_002685_030 Hb_002685_030 Hb_002740_040--Hb_002685_030 Hb_087587_010 Hb_087587_010 Hb_002740_040--Hb_087587_010 Hb_014720_030 Hb_014720_030 Hb_002740_040--Hb_014720_030 Hb_000470_110 Hb_000470_110 Hb_002740_040--Hb_000470_110 Hb_000950_040 Hb_000950_040 Hb_002740_040--Hb_000950_040 Hb_114943_020 Hb_114943_020 Hb_002740_040--Hb_114943_020 Hb_002685_030--Hb_000950_040 Hb_001522_040 Hb_001522_040 Hb_002685_030--Hb_001522_040 Hb_000732_230 Hb_000732_230 Hb_002685_030--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_002685_030--Hb_052117_010 Hb_002685_030--Hb_014720_030 Hb_000165_120 Hb_000165_120 Hb_087587_010--Hb_000165_120 Hb_000917_100 Hb_000917_100 Hb_087587_010--Hb_000917_100 Hb_010346_020 Hb_010346_020 Hb_087587_010--Hb_010346_020 Hb_002259_110 Hb_002259_110 Hb_087587_010--Hb_002259_110 Hb_004837_050 Hb_004837_050 Hb_087587_010--Hb_004837_050 Hb_004875_010 Hb_004875_010 Hb_014720_030--Hb_004875_010 Hb_001226_110 Hb_001226_110 Hb_014720_030--Hb_001226_110 Hb_001269_050 Hb_001269_050 Hb_014720_030--Hb_001269_050 Hb_122273_020 Hb_122273_020 Hb_014720_030--Hb_122273_020 Hb_001103_090 Hb_001103_090 Hb_014720_030--Hb_001103_090 Hb_005000_090 Hb_005000_090 Hb_014720_030--Hb_005000_090 Hb_002809_160 Hb_002809_160 Hb_000470_110--Hb_002809_160 Hb_004718_060 Hb_004718_060 Hb_000470_110--Hb_004718_060 Hb_001878_060 Hb_001878_060 Hb_000470_110--Hb_001878_060 Hb_011457_140 Hb_011457_140 Hb_000470_110--Hb_011457_140 Hb_000631_090 Hb_000631_090 Hb_000470_110--Hb_000631_090 Hb_054865_020 Hb_054865_020 Hb_000470_110--Hb_054865_020 Hb_000950_040--Hb_000732_230 Hb_000950_040--Hb_052117_010 Hb_000227_320 Hb_000227_320 Hb_000950_040--Hb_000227_320 Hb_000196_010 Hb_000196_010 Hb_000950_040--Hb_000196_010 Hb_006949_060 Hb_006949_060 Hb_000950_040--Hb_006949_060 Hb_115513_040 Hb_115513_040 Hb_000950_040--Hb_115513_040 Hb_000015_150 Hb_000015_150 Hb_114943_020--Hb_000015_150 Hb_000363_180 Hb_000363_180 Hb_114943_020--Hb_000363_180 Hb_002411_160 Hb_002411_160 Hb_114943_020--Hb_002411_160 Hb_114943_020--Hb_000470_110 Hb_005833_030 Hb_005833_030 Hb_114943_020--Hb_005833_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.952 29.1439 21.7766 30.5995 8.14043 16.3251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14846 0.603666 0.984783 20.1733 16.6877

CAGE analysis