Hb_001522_040

Information

Type -
Description -
Location Contig1522: 74285-88961
Sequence    

Annotation

kegg
ID rcu:RCOM_0853180
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative
nr
ID XP_002517430.1
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
swissprot
ID O04567
description Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1
trembl
ID B9RUI5
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative OS=Ricinus communis GN=RCOM_0853180 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable inactive receptor kinase at1g27190

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13083: 80670-80785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001522_040 0.0 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
2 Hb_052117_010 0.0800949493 - - kinase, putative [Ricinus communis]
3 Hb_000100_210 0.0879644289 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
4 Hb_009745_010 0.0937705678 - - cellulose synthase-like protein [Populus tomentosa]
5 Hb_001898_020 0.0966574507 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
6 Hb_029748_020 0.0988615792 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_002685_030 0.1056368257 - - PREDICTED: protein SMG7L [Jatropha curcas]
8 Hb_000950_040 0.1069746301 - - cation-transporting atpase plant, putative [Ricinus communis]
9 Hb_000732_230 0.1093675377 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
10 Hb_000997_340 0.1129722435 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000196_010 0.1192176939 - - Patellin-5, putative [Ricinus communis]
12 Hb_000363_180 0.1204839293 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
13 Hb_115513_040 0.1213376511 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002833_020 0.1220283762 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
15 Hb_002686_210 0.1250873401 - - zinc finger protein, putative [Ricinus communis]
16 Hb_006949_060 0.127067751 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
17 Hb_001832_210 0.1314247187 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
18 Hb_000120_310 0.1321246222 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
19 Hb_000085_380 0.1348477518 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000197_230 0.135026424 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001522_040 Hb_001522_040 Hb_052117_010 Hb_052117_010 Hb_001522_040--Hb_052117_010 Hb_000100_210 Hb_000100_210 Hb_001522_040--Hb_000100_210 Hb_009745_010 Hb_009745_010 Hb_001522_040--Hb_009745_010 Hb_001898_020 Hb_001898_020 Hb_001522_040--Hb_001898_020 Hb_029748_020 Hb_029748_020 Hb_001522_040--Hb_029748_020 Hb_002685_030 Hb_002685_030 Hb_001522_040--Hb_002685_030 Hb_052117_010--Hb_001898_020 Hb_000950_040 Hb_000950_040 Hb_052117_010--Hb_000950_040 Hb_052117_010--Hb_009745_010 Hb_000997_340 Hb_000997_340 Hb_052117_010--Hb_000997_340 Hb_000196_010 Hb_000196_010 Hb_052117_010--Hb_000196_010 Hb_000100_210--Hb_029748_020 Hb_002833_020 Hb_002833_020 Hb_000100_210--Hb_002833_020 Hb_000100_210--Hb_000997_340 Hb_023386_050 Hb_023386_050 Hb_000100_210--Hb_023386_050 Hb_002686_210 Hb_002686_210 Hb_000100_210--Hb_002686_210 Hb_009745_010--Hb_000196_010 Hb_000363_180 Hb_000363_180 Hb_009745_010--Hb_000363_180 Hb_002909_100 Hb_002909_100 Hb_009745_010--Hb_002909_100 Hb_009745_010--Hb_001898_020 Hb_001446_060 Hb_001446_060 Hb_001898_020--Hb_001446_060 Hb_001898_020--Hb_000950_040 Hb_005016_020 Hb_005016_020 Hb_001898_020--Hb_005016_020 Hb_000321_120 Hb_000321_120 Hb_029748_020--Hb_000321_120 Hb_002099_060 Hb_002099_060 Hb_029748_020--Hb_002099_060 Hb_000438_020 Hb_000438_020 Hb_029748_020--Hb_000438_020 Hb_155150_010 Hb_155150_010 Hb_029748_020--Hb_155150_010 Hb_002685_030--Hb_000950_040 Hb_002740_040 Hb_002740_040 Hb_002685_030--Hb_002740_040 Hb_000732_230 Hb_000732_230 Hb_002685_030--Hb_000732_230 Hb_002685_030--Hb_052117_010 Hb_014720_030 Hb_014720_030 Hb_002685_030--Hb_014720_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.79052 31.0778 18.7627 26.5584 2.47159 7.04028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.965968 0.563091 1.58426 18.3366 17.1326

CAGE analysis