Hb_001898_020

Information

Type -
Description -
Location Contig1898: 24155-26829
Sequence    

Annotation

kegg
ID rcu:RCOM_0759470
description yth domain-containing protein, putative
nr
ID XP_012066665.1
description PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LD65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00237 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18827: 26248-26540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_020 0.0 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
2 Hb_052117_010 0.0610526133 - - kinase, putative [Ricinus communis]
3 Hb_001522_040 0.0966574507 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_001446_060 0.098756291 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_009745_010 0.1039192927 - - cellulose synthase-like protein [Populus tomentosa]
6 Hb_000950_040 0.1091166207 - - cation-transporting atpase plant, putative [Ricinus communis]
7 Hb_005016_020 0.1142963788 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_000997_340 0.1156773491 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_000196_010 0.1179185461 - - Patellin-5, putative [Ricinus communis]
10 Hb_002685_030 0.1244005024 - - PREDICTED: protein SMG7L [Jatropha curcas]
11 Hb_029748_020 0.1273517375 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001832_210 0.1274464531 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
13 Hb_001430_100 0.1289016831 - - cytochrome P450, putative [Ricinus communis]
14 Hb_006949_060 0.1310732539 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
15 Hb_002909_100 0.1315942962 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
16 Hb_155150_010 0.1336420113 - - kinase, putative [Ricinus communis]
17 Hb_014720_030 0.1402492984 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
18 Hb_000230_470 0.1431781423 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
19 Hb_132840_030 0.1438570652 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
20 Hb_000220_080 0.1442519693 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001898_020 Hb_001898_020 Hb_052117_010 Hb_052117_010 Hb_001898_020--Hb_052117_010 Hb_001522_040 Hb_001522_040 Hb_001898_020--Hb_001522_040 Hb_001446_060 Hb_001446_060 Hb_001898_020--Hb_001446_060 Hb_009745_010 Hb_009745_010 Hb_001898_020--Hb_009745_010 Hb_000950_040 Hb_000950_040 Hb_001898_020--Hb_000950_040 Hb_005016_020 Hb_005016_020 Hb_001898_020--Hb_005016_020 Hb_052117_010--Hb_001522_040 Hb_052117_010--Hb_000950_040 Hb_052117_010--Hb_009745_010 Hb_000997_340 Hb_000997_340 Hb_052117_010--Hb_000997_340 Hb_000196_010 Hb_000196_010 Hb_052117_010--Hb_000196_010 Hb_000100_210 Hb_000100_210 Hb_001522_040--Hb_000100_210 Hb_001522_040--Hb_009745_010 Hb_029748_020 Hb_029748_020 Hb_001522_040--Hb_029748_020 Hb_002685_030 Hb_002685_030 Hb_001522_040--Hb_002685_030 Hb_005000_090 Hb_005000_090 Hb_001446_060--Hb_005000_090 Hb_001430_100 Hb_001430_100 Hb_001446_060--Hb_001430_100 Hb_155150_010 Hb_155150_010 Hb_001446_060--Hb_155150_010 Hb_102763_010 Hb_102763_010 Hb_001446_060--Hb_102763_010 Hb_000492_080 Hb_000492_080 Hb_001446_060--Hb_000492_080 Hb_009745_010--Hb_000196_010 Hb_000363_180 Hb_000363_180 Hb_009745_010--Hb_000363_180 Hb_002909_100 Hb_002909_100 Hb_009745_010--Hb_002909_100 Hb_000732_230 Hb_000732_230 Hb_000950_040--Hb_000732_230 Hb_000227_320 Hb_000227_320 Hb_000950_040--Hb_000227_320 Hb_000950_040--Hb_000196_010 Hb_006949_060 Hb_006949_060 Hb_000950_040--Hb_006949_060 Hb_115513_040 Hb_115513_040 Hb_000950_040--Hb_115513_040 Hb_000000_110 Hb_000000_110 Hb_005016_020--Hb_000000_110 Hb_001178_080 Hb_001178_080 Hb_005016_020--Hb_001178_080 Hb_160405_010 Hb_160405_010 Hb_005016_020--Hb_160405_010 Hb_012727_010 Hb_012727_010 Hb_005016_020--Hb_012727_010 Hb_000220_080 Hb_000220_080 Hb_005016_020--Hb_000220_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.6825 2.597 1.01784 2.78059 0.242592 0.457318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122444 0.0963159 0.179127 1.35054 1.5942

CAGE analysis