Hb_001430_100

Information

Type -
Description -
Location Contig1430: 105565-113019
Sequence    

Annotation

kegg
ID rcu:RCOM_1517780
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_002524040.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q42602
description Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2
trembl
ID B9SDH1
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1517780 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 89a2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11368: 111614-113159
cDNA
(Sanger)
(ID:Location)		 028_D18.ab1: 105407-106111

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001430_100 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_005000_090 0.1055819116 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
3 Hb_001446_060 0.1097497047 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_102763_010 0.1129938707 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
5 Hb_000227_320 0.1171685105 - - unnamed protein product [Vitis vinifera]
6 Hb_001951_070 0.1210582537 - - putative protein [Arabidopsis thaliana]
7 Hb_010381_020 0.1210897742 - - Endosomal P24A protein precursor, putative [Ricinus communis]
8 Hb_000243_400 0.1227260267 - - PREDICTED: nucleolin-like [Jatropha curcas]
9 Hb_000221_180 0.1250508002 - - VQ motif-containing family protein [Populus trichocarpa]
10 Hb_001898_020 0.1289016831 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
11 Hb_001269_050 0.1292194401 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
12 Hb_000413_250 0.1301067793 - - Cysteine-rich RLK 29 [Theobroma cacao]
13 Hb_000007_410 0.1302483521 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
14 Hb_003581_130 0.1312456012 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_000072_020 0.1326550179 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
16 Hb_052117_010 0.1330517213 - - kinase, putative [Ricinus communis]
17 Hb_014720_030 0.1342401875 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
18 Hb_004586_090 0.1350242137 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
19 Hb_005588_120 0.1354027654 - - conserved hypothetical protein [Ricinus communis]
20 Hb_073973_020 0.1368415406 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001430_100 Hb_001430_100 Hb_005000_090 Hb_005000_090 Hb_001430_100--Hb_005000_090 Hb_001446_060 Hb_001446_060 Hb_001430_100--Hb_001446_060 Hb_102763_010 Hb_102763_010 Hb_001430_100--Hb_102763_010 Hb_000227_320 Hb_000227_320 Hb_001430_100--Hb_000227_320 Hb_001951_070 Hb_001951_070 Hb_001430_100--Hb_001951_070 Hb_010381_020 Hb_010381_020 Hb_001430_100--Hb_010381_020 Hb_005000_090--Hb_102763_010 Hb_001366_270 Hb_001366_270 Hb_005000_090--Hb_001366_270 Hb_009476_120 Hb_009476_120 Hb_005000_090--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_005000_090--Hb_001998_220 Hb_000492_080 Hb_000492_080 Hb_005000_090--Hb_000492_080 Hb_000674_010 Hb_000674_010 Hb_005000_090--Hb_000674_010 Hb_001898_020 Hb_001898_020 Hb_001446_060--Hb_001898_020 Hb_001446_060--Hb_005000_090 Hb_155150_010 Hb_155150_010 Hb_001446_060--Hb_155150_010 Hb_001446_060--Hb_102763_010 Hb_001446_060--Hb_000492_080 Hb_102763_010--Hb_010381_020 Hb_102763_010--Hb_001998_220 Hb_002311_130 Hb_002311_130 Hb_102763_010--Hb_002311_130 Hb_000019_170 Hb_000019_170 Hb_102763_010--Hb_000019_170 Hb_002805_090 Hb_002805_090 Hb_102763_010--Hb_002805_090 Hb_003964_110 Hb_003964_110 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000950_040 Hb_000950_040 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_000997_290 Hb_000997_290 Hb_001951_070--Hb_000997_290 Hb_000066_040 Hb_000066_040 Hb_001951_070--Hb_000066_040 Hb_001821_060 Hb_001821_060 Hb_001951_070--Hb_001821_060 Hb_009193_010 Hb_009193_010 Hb_001951_070--Hb_009193_010 Hb_000445_370 Hb_000445_370 Hb_001951_070--Hb_000445_370 Hb_010407_030 Hb_010407_030 Hb_010381_020--Hb_010407_030 Hb_010381_020--Hb_005000_090 Hb_000167_040 Hb_000167_040 Hb_010381_020--Hb_000167_040 Hb_000997_070 Hb_000997_070 Hb_010381_020--Hb_000997_070 Hb_010381_020--Hb_002311_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19234 16.0675 8.83662 16.095 3.15989 2.04538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19919 1.34437 2.61567 13.7402 17.7212

CAGE analysis