Hb_001998_220

Information

Type -
Description -
Location Contig1998: 247350-255139
Sequence    

Annotation

kegg
ID rcu:RCOM_0771320
description isoamylase, putative (EC:3.2.1.68)
nr
ID XP_012075534.1
description PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
swissprot
ID O04196
description Isoamylase 1, chloroplastic OS=Arabidopsis thaliana GN=ISA1 PE=1 SV=1
trembl
ID A0A067KRF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09148 PE=4 SV=1
Gene Ontology
ID GO:0010368
description isoamylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20012: 231360-255363 , PASA_asmbl_20013: 249859-255244
cDNA
(Sanger)
(ID:Location)		 013_O24.ab1: 254595-255244

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_220 0.0 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
2 Hb_001702_050 0.0709223838 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
3 Hb_021977_010 0.0766945123 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
4 Hb_000809_250 0.0834758084 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
5 Hb_102763_010 0.0840782827 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
6 Hb_005000_090 0.0850666392 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
7 Hb_001414_010 0.0861472177 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
8 Hb_002311_130 0.0865950795 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
9 Hb_000844_050 0.0896135967 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
10 Hb_009476_120 0.09073408 - - Clathrin heavy chain 1 [Glycine soja]
11 Hb_003661_010 0.0924413405 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
12 Hb_002805_090 0.0955544571 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_001439_070 0.0961060423 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_010381_020 0.096593209 - - Endosomal P24A protein precursor, putative [Ricinus communis]
15 Hb_005914_040 0.0976391403 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
16 Hb_000025_500 0.0985094524 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_000492_080 0.098556652 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
18 Hb_000984_140 0.1008210336 - - PREDICTED: xylulose kinase [Jatropha curcas]
19 Hb_001998_210 0.1027409084 - - unnamed protein product [Coffea canephora]
20 Hb_001269_050 0.1054272532 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001998_220 Hb_001998_220 Hb_001702_050 Hb_001702_050 Hb_001998_220--Hb_001702_050 Hb_021977_010 Hb_021977_010 Hb_001998_220--Hb_021977_010 Hb_000809_250 Hb_000809_250 Hb_001998_220--Hb_000809_250 Hb_102763_010 Hb_102763_010 Hb_001998_220--Hb_102763_010 Hb_005000_090 Hb_005000_090 Hb_001998_220--Hb_005000_090 Hb_001414_010 Hb_001414_010 Hb_001998_220--Hb_001414_010 Hb_029879_120 Hb_029879_120 Hb_001702_050--Hb_029879_120 Hb_000985_050 Hb_000985_050 Hb_001702_050--Hb_000985_050 Hb_001702_050--Hb_005000_090 Hb_001702_050--Hb_021977_010 Hb_003125_180 Hb_003125_180 Hb_001702_050--Hb_003125_180 Hb_021977_010--Hb_001414_010 Hb_003661_010 Hb_003661_010 Hb_021977_010--Hb_003661_010 Hb_000599_360 Hb_000599_360 Hb_021977_010--Hb_000599_360 Hb_009476_120 Hb_009476_120 Hb_021977_010--Hb_009476_120 Hb_158845_060 Hb_158845_060 Hb_021977_010--Hb_158845_060 Hb_000844_050 Hb_000844_050 Hb_000809_250--Hb_000844_050 Hb_003124_270 Hb_003124_270 Hb_000809_250--Hb_003124_270 Hb_003680_020 Hb_003680_020 Hb_000809_250--Hb_003680_020 Hb_001998_150 Hb_001998_150 Hb_000809_250--Hb_001998_150 Hb_000809_250--Hb_003661_010 Hb_005181_050 Hb_005181_050 Hb_000809_250--Hb_005181_050 Hb_010381_020 Hb_010381_020 Hb_102763_010--Hb_010381_020 Hb_102763_010--Hb_005000_090 Hb_002311_130 Hb_002311_130 Hb_102763_010--Hb_002311_130 Hb_000019_170 Hb_000019_170 Hb_102763_010--Hb_000019_170 Hb_002805_090 Hb_002805_090 Hb_102763_010--Hb_002805_090 Hb_001366_270 Hb_001366_270 Hb_005000_090--Hb_001366_270 Hb_005000_090--Hb_009476_120 Hb_000492_080 Hb_000492_080 Hb_005000_090--Hb_000492_080 Hb_000674_010 Hb_000674_010 Hb_005000_090--Hb_000674_010 Hb_001414_010--Hb_003661_010 Hb_001414_010--Hb_009476_120 Hb_008165_020 Hb_008165_020 Hb_001414_010--Hb_008165_020 Hb_000300_030 Hb_000300_030 Hb_001414_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_001414_010--Hb_160608_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.54577 20.3535 13.8439 24.5198 8.38488 8.67986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.93719 3.90955 4.24028 16.2908 29.8119

CAGE analysis