Hb_001702_050

Information

Type -
Description -
Location Contig1702: 87414-104435
Sequence    

Annotation

kegg
ID rcu:RCOM_1392980
description zinc finger protein, putative
nr
ID XP_012081032.1
description PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
swissprot
ID Q8L5Y5
description Probable protein S-acyltransferase 19 OS=Arabidopsis thaliana GN=PAT19 PE=2 SV=1
trembl
ID A0A067K5W9
description S-acyltransferase OS=Jatropha curcas GN=JCGZ_16667 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15913: 89296-103495 , PASA_asmbl_15915: 103516-103863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001702_050 0.0 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
2 Hb_001998_220 0.0709223838 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
3 Hb_029879_120 0.0723517534 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000985_050 0.0878934663 - - PREDICTED: uncharacterized protein LOC105647985 isoform X1 [Jatropha curcas]
5 Hb_005000_090 0.0962247164 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
6 Hb_021977_010 0.0964725169 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
7 Hb_003125_180 0.0992227468 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
8 Hb_001484_090 0.1000803228 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_010407_030 0.1001887303 - - PREDICTED: casein kinase I-like [Jatropha curcas]
10 Hb_000109_260 0.1003682703 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
11 Hb_001414_010 0.101553013 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
12 Hb_011174_080 0.1035570833 - - PREDICTED: sulfite oxidase [Jatropha curcas]
13 Hb_000540_100 0.1039611222 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
14 Hb_102763_010 0.1055086882 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
15 Hb_009476_120 0.1082067013 - - Clathrin heavy chain 1 [Glycine soja]
16 Hb_000809_250 0.1110297013 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
17 Hb_005854_040 0.1112246821 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000027_200 0.111265223 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
19 Hb_000665_260 0.1115170969 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
20 Hb_003490_050 0.1117390671 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001702_050 Hb_001702_050 Hb_001998_220 Hb_001998_220 Hb_001702_050--Hb_001998_220 Hb_029879_120 Hb_029879_120 Hb_001702_050--Hb_029879_120 Hb_000985_050 Hb_000985_050 Hb_001702_050--Hb_000985_050 Hb_005000_090 Hb_005000_090 Hb_001702_050--Hb_005000_090 Hb_021977_010 Hb_021977_010 Hb_001702_050--Hb_021977_010 Hb_003125_180 Hb_003125_180 Hb_001702_050--Hb_003125_180 Hb_001998_220--Hb_021977_010 Hb_000809_250 Hb_000809_250 Hb_001998_220--Hb_000809_250 Hb_102763_010 Hb_102763_010 Hb_001998_220--Hb_102763_010 Hb_001998_220--Hb_005000_090 Hb_001414_010 Hb_001414_010 Hb_001998_220--Hb_001414_010 Hb_029879_120--Hb_003125_180 Hb_000019_010 Hb_000019_010 Hb_029879_120--Hb_000019_010 Hb_011174_080 Hb_011174_080 Hb_029879_120--Hb_011174_080 Hb_001235_130 Hb_001235_130 Hb_029879_120--Hb_001235_130 Hb_000157_070 Hb_000157_070 Hb_029879_120--Hb_000157_070 Hb_011457_140 Hb_011457_140 Hb_000985_050--Hb_011457_140 Hb_001558_040 Hb_001558_040 Hb_000985_050--Hb_001558_040 Hb_000109_260 Hb_000109_260 Hb_000985_050--Hb_000109_260 Hb_080147_050 Hb_080147_050 Hb_000985_050--Hb_080147_050 Hb_000976_110 Hb_000976_110 Hb_000985_050--Hb_000976_110 Hb_005000_090--Hb_102763_010 Hb_001366_270 Hb_001366_270 Hb_005000_090--Hb_001366_270 Hb_009476_120 Hb_009476_120 Hb_005000_090--Hb_009476_120 Hb_000492_080 Hb_000492_080 Hb_005000_090--Hb_000492_080 Hb_000674_010 Hb_000674_010 Hb_005000_090--Hb_000674_010 Hb_021977_010--Hb_001414_010 Hb_003661_010 Hb_003661_010 Hb_021977_010--Hb_003661_010 Hb_000599_360 Hb_000599_360 Hb_021977_010--Hb_000599_360 Hb_021977_010--Hb_009476_120 Hb_158845_060 Hb_158845_060 Hb_021977_010--Hb_158845_060 Hb_011032_010 Hb_011032_010 Hb_003125_180--Hb_011032_010 Hb_169051_010 Hb_169051_010 Hb_003125_180--Hb_169051_010 Hb_000019_170 Hb_000019_170 Hb_003125_180--Hb_000019_170 Hb_003125_180--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_003125_180--Hb_003058_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91824 7.44485 4.99108 8.29975 2.12557 3.84779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79221 1.52537 0.877278 7.37337 9.50599

CAGE analysis