Hb_011032_010

Information

Type -
Description -
Location Contig11032: 5575-14675
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012072750.1
description PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067KN28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03217: 9724-10212 , PASA_asmbl_03218: 10501-15148 , PASA_asmbl_03219: 10501-15148 , PASA_asmbl_03220: 10501-14534 , PASA_asmbl_03221: 10501-11162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011032_010 0.0 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
2 Hb_003125_180 0.0709570318 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
3 Hb_053575_020 0.0850092992 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
4 Hb_169051_010 0.0893835827 - - JHL06B08.1 [Jatropha curcas]
5 Hb_003058_200 0.0946324144 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
6 Hb_000674_010 0.0952140883 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
7 Hb_002851_010 0.0994290219 - - sugar transporter, putative [Ricinus communis]
8 Hb_005217_040 0.1031900979 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
9 Hb_000019_170 0.1066094888 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
10 Hb_002027_190 0.1147826842 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
11 Hb_029879_120 0.1200984314 - - conserved hypothetical protein [Ricinus communis]
12 Hb_021297_020 0.1213907222 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
13 Hb_000684_360 0.12267574 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
14 Hb_020805_180 0.1240804974 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
15 Hb_005000_090 0.1243986376 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
16 Hb_000000_120 0.1253074143 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
17 Hb_001006_010 0.1273869923 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_002072_010 0.1285569559 - - conserved hypothetical protein [Ricinus communis]
19 Hb_135959_010 0.1296111116 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
20 Hb_000157_070 0.1297411422 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]

Gene co-expression network

sample Hb_011032_010 Hb_011032_010 Hb_003125_180 Hb_003125_180 Hb_011032_010--Hb_003125_180 Hb_053575_020 Hb_053575_020 Hb_011032_010--Hb_053575_020 Hb_169051_010 Hb_169051_010 Hb_011032_010--Hb_169051_010 Hb_003058_200 Hb_003058_200 Hb_011032_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_011032_010--Hb_000674_010 Hb_002851_010 Hb_002851_010 Hb_011032_010--Hb_002851_010 Hb_003125_180--Hb_169051_010 Hb_000019_170 Hb_000019_170 Hb_003125_180--Hb_000019_170 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120 Hb_003125_180--Hb_000674_010 Hb_003125_180--Hb_003058_200 Hb_053575_020--Hb_003125_180 Hb_000227_330 Hb_000227_330 Hb_053575_020--Hb_000227_330 Hb_000684_360 Hb_000684_360 Hb_053575_020--Hb_000684_360 Hb_002151_100 Hb_002151_100 Hb_053575_020--Hb_002151_100 Hb_000866_110 Hb_000866_110 Hb_053575_020--Hb_000866_110 Hb_169051_010--Hb_000684_360 Hb_146510_010 Hb_146510_010 Hb_169051_010--Hb_146510_010 Hb_001322_180 Hb_001322_180 Hb_169051_010--Hb_001322_180 Hb_169051_010--Hb_053575_020 Hb_002072_010 Hb_002072_010 Hb_003058_200--Hb_002072_010 Hb_003058_200--Hb_000674_010 Hb_003058_200--Hb_000019_170 Hb_021297_020 Hb_021297_020 Hb_003058_200--Hb_021297_020 Hb_003058_200--Hb_002851_010 Hb_000674_010--Hb_002072_010 Hb_000674_010--Hb_021297_020 Hb_000674_010--Hb_002851_010 Hb_005000_090 Hb_005000_090 Hb_000674_010--Hb_005000_090 Hb_135959_010 Hb_135959_010 Hb_002851_010--Hb_135959_010 Hb_002027_190 Hb_002027_190 Hb_002851_010--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_002851_010--Hb_020805_180 Hb_000157_070 Hb_000157_070 Hb_002851_010--Hb_000157_070 Hb_000649_060 Hb_000649_060 Hb_002851_010--Hb_000649_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1944 11.9222 3.25684 13.3261 4.68536 5.05258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44705 1.69346 2.33803 18.1391 13.7662

CAGE analysis