Hb_146510_010

Information

Type -
Description -
Location Contig146510: 1123-3273
Sequence    

Annotation

kegg
ID cit:102607276
description CAD; carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase (EC:2.1.3.2)
nr
ID ADU64756.1
description cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
swissprot
ID O64969
description Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1
trembl
ID E9M774
description Cinnamyl alcohol dehydrogenase OS=Hevea brasiliensis GN=CAD PE=2 SV=1
Gene Ontology
ID GO:0008270
description cinnamyl alcohol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11899: 1194-3295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146510_010 0.0 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
2 Hb_169051_010 0.0990394596 - - JHL06B08.1 [Jatropha curcas]
3 Hb_014720_030 0.1417280818 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
4 Hb_001446_060 0.1445897329 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_003125_180 0.1449955075 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
6 Hb_000000_120 0.1457036233 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
7 Hb_001898_020 0.1477869804 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
8 Hb_000220_080 0.1486229745 - - kinase, putative [Ricinus communis]
9 Hb_005000_090 0.1505415794 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
10 Hb_155150_010 0.1515985195 - - kinase, putative [Ricinus communis]
11 Hb_002685_030 0.1519321509 - - PREDICTED: protein SMG7L [Jatropha curcas]
12 Hb_001702_050 0.1521063095 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
13 Hb_002072_010 0.1527782579 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002740_040 0.1533171188 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
15 Hb_159411_010 0.1547718219 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
16 Hb_029879_120 0.1553679023 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011032_010 0.1556800009 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
18 Hb_000492_080 0.15730346 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
19 Hb_000197_230 0.1573302406 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
20 Hb_001625_010 0.1587440245 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]

Gene co-expression network

sample Hb_146510_010 Hb_146510_010 Hb_169051_010 Hb_169051_010 Hb_146510_010--Hb_169051_010 Hb_014720_030 Hb_014720_030 Hb_146510_010--Hb_014720_030 Hb_001446_060 Hb_001446_060 Hb_146510_010--Hb_001446_060 Hb_003125_180 Hb_003125_180 Hb_146510_010--Hb_003125_180 Hb_000000_120 Hb_000000_120 Hb_146510_010--Hb_000000_120 Hb_001898_020 Hb_001898_020 Hb_146510_010--Hb_001898_020 Hb_169051_010--Hb_003125_180 Hb_011032_010 Hb_011032_010 Hb_169051_010--Hb_011032_010 Hb_000684_360 Hb_000684_360 Hb_169051_010--Hb_000684_360 Hb_001322_180 Hb_001322_180 Hb_169051_010--Hb_001322_180 Hb_053575_020 Hb_053575_020 Hb_169051_010--Hb_053575_020 Hb_004875_010 Hb_004875_010 Hb_014720_030--Hb_004875_010 Hb_001226_110 Hb_001226_110 Hb_014720_030--Hb_001226_110 Hb_001269_050 Hb_001269_050 Hb_014720_030--Hb_001269_050 Hb_122273_020 Hb_122273_020 Hb_014720_030--Hb_122273_020 Hb_001103_090 Hb_001103_090 Hb_014720_030--Hb_001103_090 Hb_005000_090 Hb_005000_090 Hb_014720_030--Hb_005000_090 Hb_001446_060--Hb_001898_020 Hb_001446_060--Hb_005000_090 Hb_001430_100 Hb_001430_100 Hb_001446_060--Hb_001430_100 Hb_155150_010 Hb_155150_010 Hb_001446_060--Hb_155150_010 Hb_102763_010 Hb_102763_010 Hb_001446_060--Hb_102763_010 Hb_000492_080 Hb_000492_080 Hb_001446_060--Hb_000492_080 Hb_003125_180--Hb_011032_010 Hb_000019_170 Hb_000019_170 Hb_003125_180--Hb_000019_170 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120 Hb_000674_010 Hb_000674_010 Hb_003125_180--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_003125_180--Hb_003058_200 Hb_003506_020 Hb_003506_020 Hb_000000_120--Hb_003506_020 Hb_000220_080 Hb_000220_080 Hb_000000_120--Hb_000220_080 Hb_005970_010 Hb_005970_010 Hb_000000_120--Hb_005970_010 Hb_002072_010 Hb_002072_010 Hb_000000_120--Hb_002072_010 Hb_002316_170 Hb_002316_170 Hb_000000_120--Hb_002316_170 Hb_000000_120--Hb_003125_180 Hb_052117_010 Hb_052117_010 Hb_001898_020--Hb_052117_010 Hb_001522_040 Hb_001522_040 Hb_001898_020--Hb_001522_040 Hb_009745_010 Hb_009745_010 Hb_001898_020--Hb_009745_010 Hb_000950_040 Hb_000950_040 Hb_001898_020--Hb_000950_040 Hb_005016_020 Hb_005016_020 Hb_001898_020--Hb_005016_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
152.858 413.533 132.475 450.58 72.9118 189.435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.8331 13.5293 15.3904 439.953 362.802

CAGE analysis