Hb_000492_080

Information

Type -
Description -
Location Contig492: 87747-95748
Sequence    

Annotation

kegg
ID cic:CICLE_v10007311mg
description hypothetical protein
nr
ID XP_012081178.1
description PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
swissprot
ID O22060
description Probable sucrose-phosphate synthase 1 OS=Citrus unshiu GN=SPS1 PE=2 SV=1
trembl
ID A0A067K5G6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17020 PE=4 SV=1
Gene Ontology
ID GO:0005829
description sucrose phosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45329: 87571-95747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000492_080 0.0 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
2 Hb_005000_090 0.0873724419 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
3 Hb_001269_050 0.0929024534 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
4 Hb_001998_220 0.098556652 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
5 Hb_000445_130 0.0995064035 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
6 Hb_001366_270 0.1023780775 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
7 Hb_001341_010 0.104576878 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
8 Hb_000809_250 0.1064225927 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
9 Hb_002311_130 0.1112968601 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
10 Hb_001702_050 0.1126606491 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
11 Hb_023765_010 0.1181623991 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_002400_060 0.1184098569 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
13 Hb_102763_010 0.1185842411 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
14 Hb_001054_120 0.1201671877 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
15 Hb_000025_500 0.1214222269 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_009476_120 0.1242729239 - - Clathrin heavy chain 1 [Glycine soja]
17 Hb_001446_060 0.1251297435 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_000367_020 0.1287836114 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
19 Hb_003124_270 0.1287997811 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
20 Hb_002805_090 0.128936902 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000492_080 Hb_000492_080 Hb_005000_090 Hb_005000_090 Hb_000492_080--Hb_005000_090 Hb_001269_050 Hb_001269_050 Hb_000492_080--Hb_001269_050 Hb_001998_220 Hb_001998_220 Hb_000492_080--Hb_001998_220 Hb_000445_130 Hb_000445_130 Hb_000492_080--Hb_000445_130 Hb_001366_270 Hb_001366_270 Hb_000492_080--Hb_001366_270 Hb_001341_010 Hb_001341_010 Hb_000492_080--Hb_001341_010 Hb_102763_010 Hb_102763_010 Hb_005000_090--Hb_102763_010 Hb_005000_090--Hb_001366_270 Hb_009476_120 Hb_009476_120 Hb_005000_090--Hb_009476_120 Hb_005000_090--Hb_001998_220 Hb_000674_010 Hb_000674_010 Hb_005000_090--Hb_000674_010 Hb_014720_030 Hb_014720_030 Hb_001269_050--Hb_014720_030 Hb_001269_050--Hb_001998_220 Hb_013405_180 Hb_013405_180 Hb_001269_050--Hb_013405_180 Hb_011616_040 Hb_011616_040 Hb_001269_050--Hb_011616_040 Hb_001054_120 Hb_001054_120 Hb_001269_050--Hb_001054_120 Hb_001702_050 Hb_001702_050 Hb_001998_220--Hb_001702_050 Hb_021977_010 Hb_021977_010 Hb_001998_220--Hb_021977_010 Hb_000809_250 Hb_000809_250 Hb_001998_220--Hb_000809_250 Hb_001998_220--Hb_102763_010 Hb_001414_010 Hb_001414_010 Hb_001998_220--Hb_001414_010 Hb_000154_130 Hb_000154_130 Hb_000445_130--Hb_000154_130 Hb_007012_040 Hb_007012_040 Hb_000445_130--Hb_007012_040 Hb_001951_100 Hb_001951_100 Hb_000445_130--Hb_001951_100 Hb_015183_080 Hb_015183_080 Hb_000445_130--Hb_015183_080 Hb_003124_270 Hb_003124_270 Hb_000445_130--Hb_003124_270 Hb_000367_020 Hb_000367_020 Hb_000445_130--Hb_000367_020 Hb_005181_050 Hb_005181_050 Hb_001366_270--Hb_005181_050 Hb_001366_270--Hb_000809_250 Hb_001366_270--Hb_001341_010 Hb_001511_180 Hb_001511_180 Hb_001366_270--Hb_001511_180 Hb_000540_100 Hb_000540_100 Hb_001366_270--Hb_000540_100 Hb_001341_010--Hb_005181_050 Hb_000167_120 Hb_000167_120 Hb_001341_010--Hb_000167_120 Hb_000025_500 Hb_000025_500 Hb_001341_010--Hb_000025_500 Hb_000186_080 Hb_000186_080 Hb_001341_010--Hb_000186_080 Hb_003490_050 Hb_003490_050 Hb_001341_010--Hb_003490_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6029 59.61 19.1398 55.6709 14.687 25.1015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.47133 4.97525 13.2582 41.3688 75.5593

CAGE analysis