Hb_014720_030

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig14720: 84431-86322
Sequence    

Annotation

kegg
ID pop:POPTR_0012s08280g
description POPTRDRAFT_570095; hypothetical protein
nr
ID XP_002318052.1
description hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
swissprot
ID Q9FM03
description Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2
trembl
ID B9I3A6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s08280g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11952: 84459-86423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_030 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
2 Hb_004875_010 0.0970066466 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
3 Hb_001226_110 0.0987260479 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
4 Hb_001269_050 0.1012411726 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
5 Hb_122273_020 0.102378686 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
6 Hb_001103_090 0.1073025395 - - PREDICTED: patellin-3 [Populus euphratica]
7 Hb_005000_090 0.1120499851 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
8 Hb_002005_030 0.1142876388 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_002740_040 0.1152623081 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
10 Hb_000950_040 0.116523869 - - cation-transporting atpase plant, putative [Ricinus communis]
11 Hb_001054_120 0.118612348 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
12 Hb_002685_030 0.1188611263 - - PREDICTED: protein SMG7L [Jatropha curcas]
13 Hb_000917_100 0.1190512167 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
14 Hb_000732_230 0.1228303295 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
15 Hb_000133_090 0.1229561142 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
16 Hb_000413_250 0.1241994487 - - Cysteine-rich RLK 29 [Theobroma cacao]
17 Hb_000227_320 0.1249279077 - - unnamed protein product [Vitis vinifera]
18 Hb_001414_010 0.1252991816 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
19 Hb_009476_120 0.1278366221 - - Clathrin heavy chain 1 [Glycine soja]
20 Hb_005772_030 0.128108755 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]

Gene co-expression network

sample Hb_014720_030 Hb_014720_030 Hb_004875_010 Hb_004875_010 Hb_014720_030--Hb_004875_010 Hb_001226_110 Hb_001226_110 Hb_014720_030--Hb_001226_110 Hb_001269_050 Hb_001269_050 Hb_014720_030--Hb_001269_050 Hb_122273_020 Hb_122273_020 Hb_014720_030--Hb_122273_020 Hb_001103_090 Hb_001103_090 Hb_014720_030--Hb_001103_090 Hb_005000_090 Hb_005000_090 Hb_014720_030--Hb_005000_090 Hb_000922_220 Hb_000922_220 Hb_004875_010--Hb_000922_220 Hb_004875_010--Hb_122273_020 Hb_000649_270 Hb_000649_270 Hb_004875_010--Hb_000649_270 Hb_002005_030 Hb_002005_030 Hb_004875_010--Hb_002005_030 Hb_005772_030 Hb_005772_030 Hb_004875_010--Hb_005772_030 Hb_005649_080 Hb_005649_080 Hb_001226_110--Hb_005649_080 Hb_001226_110--Hb_001103_090 Hb_009476_120 Hb_009476_120 Hb_001226_110--Hb_009476_120 Hb_000358_220 Hb_000358_220 Hb_001226_110--Hb_000358_220 Hb_170077_010 Hb_170077_010 Hb_001226_110--Hb_170077_010 Hb_000358_100 Hb_000358_100 Hb_001226_110--Hb_000358_100 Hb_000492_080 Hb_000492_080 Hb_001269_050--Hb_000492_080 Hb_001998_220 Hb_001998_220 Hb_001269_050--Hb_001998_220 Hb_013405_180 Hb_013405_180 Hb_001269_050--Hb_013405_180 Hb_011616_040 Hb_011616_040 Hb_001269_050--Hb_011616_040 Hb_001054_120 Hb_001054_120 Hb_001269_050--Hb_001054_120 Hb_122273_020--Hb_001054_120 Hb_000243_400 Hb_000243_400 Hb_122273_020--Hb_000243_400 Hb_002918_320 Hb_002918_320 Hb_122273_020--Hb_002918_320 Hb_000413_250 Hb_000413_250 Hb_122273_020--Hb_000413_250 Hb_001675_320 Hb_001675_320 Hb_001103_090--Hb_001675_320 Hb_000205_280 Hb_000205_280 Hb_001103_090--Hb_000205_280 Hb_000020_160 Hb_000020_160 Hb_001103_090--Hb_000020_160 Hb_001259_120 Hb_001259_120 Hb_001103_090--Hb_001259_120 Hb_000260_780 Hb_000260_780 Hb_001103_090--Hb_000260_780 Hb_102763_010 Hb_102763_010 Hb_005000_090--Hb_102763_010 Hb_001366_270 Hb_001366_270 Hb_005000_090--Hb_001366_270 Hb_005000_090--Hb_009476_120 Hb_005000_090--Hb_001998_220 Hb_005000_090--Hb_000492_080 Hb_000674_010 Hb_000674_010 Hb_005000_090--Hb_000674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.15161 11.4685 5.86878 9.19696 3.70938 3.79221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.94369 0.415718 1.2743 7.05808 8.50825

CAGE analysis