Hb_000260_780

Information

Type -
Description -
Location Contig260: 581620-587666
Sequence    

Annotation

kegg
ID rcu:RCOM_1324630
description protein binding protein, putative
nr
ID XP_012090917.1
description PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
swissprot
ID Q9LW77
description ERAD-associated E3 ubiquitin-protein ligase HRD1A OS=Arabidopsis thaliana GN=HRD1A PE=2 SV=1
trembl
ID B9S201
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1324630 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase synoviolin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27069: 581680-587479
cDNA
(Sanger)
(ID:Location)		 002_E15r.ab1: 587735-593099 , 034_H04.ab1: 586852-587479 , 053_C15.ab1: 586913-587448

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_780 0.0 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
2 Hb_009252_050 0.076206122 - - protein binding protein, putative [Ricinus communis]
3 Hb_002092_070 0.0810709829 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
4 Hb_000205_280 0.0811411245 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
5 Hb_000358_100 0.0827747298 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
6 Hb_000580_050 0.0834355788 - - -
7 Hb_000020_160 0.0850930929 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
8 Hb_044486_040 0.0861142933 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
9 Hb_150346_010 0.0862761921 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
10 Hb_000010_420 0.0870751445 - - Callose synthase 10 [Morus notabilis]
11 Hb_000284_230 0.0873919686 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
12 Hb_001103_090 0.0890237655 - - PREDICTED: patellin-3 [Populus euphratica]
13 Hb_178968_050 0.0903742336 - - PREDICTED: probable serine incorporator [Jatropha curcas]
14 Hb_000172_340 0.0905995568 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
15 Hb_004645_070 0.0920353076 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
16 Hb_000243_300 0.0921072954 - - catalytic, putative [Ricinus communis]
17 Hb_134362_010 0.0935417162 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
18 Hb_002005_030 0.0939704336 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
19 Hb_000243_130 0.0947563004 - - hypothetical protein M569_10795, partial [Genlisea aurea]
20 Hb_001904_030 0.0966703355 - - PREDICTED: importin-5 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_780 Hb_000260_780 Hb_009252_050 Hb_009252_050 Hb_000260_780--Hb_009252_050 Hb_002092_070 Hb_002092_070 Hb_000260_780--Hb_002092_070 Hb_000205_280 Hb_000205_280 Hb_000260_780--Hb_000205_280 Hb_000358_100 Hb_000358_100 Hb_000260_780--Hb_000358_100 Hb_000580_050 Hb_000580_050 Hb_000260_780--Hb_000580_050 Hb_000020_160 Hb_000020_160 Hb_000260_780--Hb_000020_160 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_004429_010 Hb_004429_010 Hb_009252_050--Hb_004429_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_002045_250 Hb_002045_250 Hb_002092_070--Hb_002045_250 Hb_002092_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_002092_070--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_002092_070--Hb_001221_090 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150 Hb_001103_090 Hb_001103_090 Hb_000205_280--Hb_001103_090 Hb_001159_030 Hb_001159_030 Hb_000205_280--Hb_001159_030 Hb_158845_060 Hb_158845_060 Hb_000205_280--Hb_158845_060 Hb_000784_080 Hb_000784_080 Hb_000205_280--Hb_000784_080 Hb_000054_040 Hb_000054_040 Hb_000205_280--Hb_000054_040 Hb_000358_100--Hb_000020_160 Hb_000284_230 Hb_000284_230 Hb_000358_100--Hb_000284_230 Hb_000359_190 Hb_000359_190 Hb_000358_100--Hb_000359_190 Hb_000066_150 Hb_000066_150 Hb_000358_100--Hb_000066_150 Hb_007245_020 Hb_007245_020 Hb_000358_100--Hb_007245_020 Hb_000172_340 Hb_000172_340 Hb_000358_100--Hb_000172_340 Hb_000856_300 Hb_000856_300 Hb_000580_050--Hb_000856_300 Hb_001558_040 Hb_001558_040 Hb_000580_050--Hb_001558_040 Hb_000243_300 Hb_000243_300 Hb_000580_050--Hb_000243_300 Hb_000580_050--Hb_000172_340 Hb_000580_050--Hb_001085_110 Hb_000358_220 Hb_000358_220 Hb_000020_160--Hb_000358_220 Hb_044486_020 Hb_044486_020 Hb_000020_160--Hb_044486_020 Hb_024650_080 Hb_024650_080 Hb_000020_160--Hb_024650_080 Hb_000020_160--Hb_000172_340 Hb_170077_010 Hb_170077_010 Hb_000020_160--Hb_170077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2906 41.7271 26.0859 42.4517 32.4139 23.011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.12427 8.77811 9.56036 35.8223 26.0773

CAGE analysis